Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P18
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +3

Query: 585 SAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 764
           +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P    N  ++S  
Sbjct: 374 TALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP----NMSNMSGM 429

Query: 765 KPIRRQSTRL*SKPSEP---XPKRRCSADTS 848
            P+      + + P+ P    P RR  +D S
Sbjct: 430 PPLPNMPGSMPTMPTMPSMAGPIRRRISDKS 460


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 802 FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 701
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 802 FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 701
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 898  KAQPMGILAGXESEXXLEVSAEHLLFGSGSDGFDHSLVD 782
            KA+P  I+A  ES   +    E L     +DG   SLVD
Sbjct: 895  KAEPGSIMAMSESSKKVLSPGELLSSCVSNDGGCSSLVD 933


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,475
Number of Sequences: 438
Number of extensions: 4994
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)