Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P16
         (898 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           29   0.037
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       26   0.46 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   4.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   4.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   4.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   4.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 428 PLPATPSCSPKPGMRVPVRLSPCPFT--LSRASPAEAALSLWRSLKSADPMALSTFLSLP 255
           PLP+  + SP+P   +PV   P P    L +   +    +   ++ ++ PM ++T     
Sbjct: 71  PLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPPMPITTDNVAA 130

Query: 254 VRGTFRAAPEVP 219
           + G  R+  + P
Sbjct: 131 ISGVLRSLLDRP 142


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = -2

Query: 573 MRPPSVEHVVHSAAQRVXXXXXXXXXXXXXXXRTPLALRSWLLLWNKLT 427
           +RPP     +H  A+                  T L +  W+LL NK+T
Sbjct: 365 VRPPLTREEIHEKARENLKHHANLRQKNQKGEVTVLEIEDWVLLKNKVT 413


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 817 NXYVRI*KGIYDFTAFA*YFLXNLEKENPTLGS 719
           N Y+    G  DF   A + L +  K+N TLG+
Sbjct: 154 NTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 186


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 817 NXYVRI*KGIYDFTAFA*YFLXNLEKENPTLGS 719
           N Y+    G  DF   A + L +  K+N TLG+
Sbjct: 468 NTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 500


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 817 NXYVRI*KGIYDFTAFA*YFLXNLEKENPTLGS 719
           N Y+    G  DF   A + L +  K+N TLG+
Sbjct: 701 NTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 733


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 817 NXYVRI*KGIYDFTAFA*YFLXNLEKENPTLGS 719
           N Y+    G  DF   A + L +  K+N TLG+
Sbjct: 701 NTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 733


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 329 EAALSLWRSLKSADPMALSTF 267
           E  L+ W+  KSA+ +A+  F
Sbjct: 372 EVNLTCWQDTKSANKIAMKLF 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,481
Number of Sequences: 336
Number of extensions: 3210
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)