Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_P16
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1125 + 31085106-31085714 33 0.23
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.23
05_07_0359 - 29539294-29540832,29542366-29542518 29 3.8
07_01_0974 + 8211602-8212051 29 5.0
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 29 5.0
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 5.0
02_04_0470 - 23183925-23184743,23184929-23185153 29 5.0
11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075 29 6.6
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319... 29 6.6
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 29 6.6
02_02_0272 - 8452994-8453187,8453850-8454975 29 6.6
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.8
07_03_0723 + 20954827-20954905,20954974-20956277 28 8.8
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275... 28 8.8
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 8.8
>04_04_1125 + 31085106-31085714
Length = 202
Score = 33.5 bits (73), Expect = 0.23
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Frame = -3
Query: 446 YCGTS*PL--PATPSCSPKPGMRVPVRLS--PCPFTLSRASPAEAALSLWRSLKSADPMA 279
+CG++ P P P C P P P + P P+T A+P + W + P
Sbjct: 29 WCGSNCPTTKPPPPPCQPPPPTPTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPT 88
Query: 278 LSTFLSLPVRGTFRAAPEVPS----EFTVKLPACLRARVG 171
+T + T AP P+ T+KL AC+ A G
Sbjct: 89 PATPATPTTPPTPAPAPSTPTGKCPVDTLKLLACVDALNG 128
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -3
Query: 392 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 276
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 29.5 bits (63), Expect = 3.8
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Frame = -3
Query: 506 GDGAGRVPDRER----PWRSGRGCYCGTS*PLPATPSCSPKPGMRVPVRLSPCPFTLSRA 339
G G GR P + P + G G + P P KPG P R +P P S +
Sbjct: 121 GRGRGRPPKKASSSAPPQKRGPGRPRKNTALFPV-PVLEAKPGRGRP-RKNPLPVASSTS 178
Query: 338 SPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVG 171
S A AA +L +K + P+R + P P + P L A+ G
Sbjct: 179 SAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKRGPGRPRKNAAATPLRLGAKRG 234
>07_01_0974 + 8211602-8212051
Length = 149
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = -3
Query: 542 TPPPSVFEVGRVGDGAGRVPDRERPWRSGRGCYCGTS*PLPATPS 408
+PPP VG G G G P C CGT+ PA PS
Sbjct: 48 SPPPPSSPVGGGGTGGGGPSPPTNPAPPAVPCNCGTT-TAPAAPS 91
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 437 TS*PLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 294
TS P A P +P PV +P P + +PA A+ WR+ K+
Sbjct: 60 TSSPSVAAPEKAPVAAAPAPV--APAPAATKQVAPARWAVDSWRTKKA 105
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 420 CDAELLPEAGNAGPGQTQPV 361
C A LLPE GN G GQ+ V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 29.1 bits (62), Expect = 5.0
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Frame = -3
Query: 455 RGCYCGTS*PLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAAL-----SLWRSLKSA 291
RG + TS LP PS +PGMRV R SP +RA P +L S W
Sbjct: 148 RGRWVATS-SLP--PSLPAQPGMRVAHRWSPAK---ARALPPPPSLRYPSRSSWDGADLD 201
Query: 290 DPMALSTFLSLPVRGTFR-AAPEVPSEFTVKLPACLRARV 174
P A ST S R R P S + + C RA +
Sbjct: 202 GPTAASTTTSRRRRRHHRLVPPPAASPLSNRQRHCCRAAI 241
>11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075
Length = 479
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 270 VLVVAGERDLQGGPGGSVRVHCEAAGLSPRTCRHVF 163
V +VAGE Q GP S V C+ AG + C F
Sbjct: 388 VSIVAGETPPQHGPLLSFFVECDQAGRGEKPCTSCF 423
>11_06_0364 - 22727978-22729149,22730475-22730727,22731628-22731963,
22732306-22732512,22734988-22735686,22736441-22736590,
22740204-22740962,22741023-22741235
Length = 1262
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 270 VLVVAGERDLQGGPGGSVRVHCEAAGLSPRTCRHVF 163
V +VAGE Q GP S V C+ AG + C F
Sbjct: 1171 VSIVAGETPPQHGPLLSFFVECDQAGRGEKPCTSCF 1206
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 292 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAG 423
A N+R + S AS +A + + HG+ + G P +G AG
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAG 216
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 377 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 246
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 380 PVRLSPCPFTLSRASPAEAA 321
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 407 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 306
CSP P R+P+R + C +ASP + + WR
Sbjct: 62 CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93
>07_01_0370 +
2749353-2749786,2749949-2750346,2750435-2750519,
2751200-2751314,2751538-2751591
Length = 361
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 279 AEHVLVVAGERDLQGGPGGSVRVHCEAAGLSP-RTCRH 169
A V++ AG R GG GG V VH AA SP T RH
Sbjct: 17 AASVVIAAGPR--YGGGGGGVHVHPWAAFPSPTATTRH 52
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.3 bits (60), Expect = 8.8
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Frame = -3
Query: 470 PWRSGRGCYCGTS*PLPATPS-CSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWR-SLK 297
P + GC + +P+ S C PK G+ + P + S +S S+W+ S +
Sbjct: 2432 PGYASLGCVATKTDEMPSNDSVCCPKMGLVNHANILEDPISRSSSSKGPNCWSIWKVSNQ 2491
Query: 296 SADPMALSTFLSLPVRGTFR----AAPEVPSEFTVKLP-ACLRARV 174
+A S P + +R A P+V T +L CL +
Sbjct: 2492 GCTFLATSDTKKPPAQMAYRIADHAKPKVRENITAELKFGCLSVSI 2537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,682,795
Number of Sequences: 37544
Number of extensions: 438232
Number of successful extensions: 1543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -