Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_P15
(930 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710... 31 0.99
07_01_0975 + 8223269-8224354 31 0.99
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460... 31 0.99
08_02_0551 - 18535219-18536134,18536140-18536345 31 1.3
03_05_0571 - 25713519-25714064,25714673-25714804 31 1.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 30 3.0
08_02_0018 - 11267949-11268095,11268171-11268260,11269180-112692... 29 4.0
05_03_0488 - 14651532-14652265,14652404-14653988 28 9.2
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 28 9.2
>10_07_0039 -
12269928-12270103,12270871-12271015,12271066-12271094,
12271394-12271478
Length = 144
Score = 31.5 bits (68), Expect = 0.99
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 200 GARVVPGAAREPRHRPAHSHTL 265
G R VPG + PRHRP H T+
Sbjct: 83 GRRAVPGQSTVPRHRPRHDPTI 104
>07_01_0975 + 8223269-8224354
Length = 361
Score = 31.5 bits (68), Expect = 0.99
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 2/122 (1%)
Frame = +3
Query: 276 DAGLRGARAEYPDQPHGRPCNTGTSDPXSWLGR*RXXCTRAPAGCTSGAHTLRGTTRGPS 455
D G G+ P P ++ + P S + +PAG +G T G GPS
Sbjct: 234 DTGYGGSSGSPSSSPSSSPSSSPSGSPSSSPS---GSPSGSPAGSPAGGPTAGGPASGPS 290
Query: 456 ESHSSGKLQHGTSRTGAIAGRRCG-SLLXLXAXXRGHLA-GGTXXPXAHRTXSXASEKPR 629
++ G S +GA +G G S G + G T P + S +++ P
Sbjct: 291 SYGAASGPAEGPSSSGAASGPAEGPSPSGAAGPAEGPSSYGSTEGPSPSPSSSGSADAPG 350
Query: 630 XG 635
G
Sbjct: 351 PG 352
>02_01_0615 -
4604373-4604537,4604618-4604707,4604871-4604989,
4605132-4605234,4605318-4605414,4605512-4605575,
4605673-4605805,4605899-4606143,4606263-4606439,
4607110-4607419
Length = 500
Score = 31.5 bits (68), Expect = 0.99
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 471 PMNATPMDLE-LYPVRCARPTCSQPEPSYTXXVT 373
PM MDL+ LY V C QPEPSY +T
Sbjct: 433 PMIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLIT 466
>08_02_0551 - 18535219-18536134,18536140-18536345
Length = 373
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 435 PVRCARPTCSQPEPSYTXXVTSPTRXEGPMSQYCKASHVVGLDIPHELLAAQR 277
PV RPT + P P+ T SP + + +H V ++ E+LAA R
Sbjct: 46 PVAAPRPTSTSPRPTSTGDGWSPRAAAETVGFFQVVNHGVAGELMEEMLAAVR 98
>03_05_0571 - 25713519-25714064,25714673-25714804
Length = 225
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 480 EVCPMNATPMDLELYPVRCARPTCSQPEPSYTXXVTS 370
+ CP ATP DL L+PV A + ++P PS T S
Sbjct: 53 QTCP--ATPTDLNLFPVPGAAASAAKPCPSSTAAAAS 87
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 171 LTTSQSAAISVRSELRASASTTAEWRRAMSRERRVPARQHAHPKILRIPYSEW 13
L T + V +E A+A A R A+ R RR ARQHA +++ + S +
Sbjct: 187 LATRSKKRVMVVAECAAAAEAAA--RAAVDRIRRGEARQHAQAQVVTLAVSRF 237
>08_02_0018 -
11267949-11268095,11268171-11268260,11269180-11269298,
11269386-11269488,11269595-11269691,11269800-11269863,
11269955-11270087,11270176-11270423,11270527-11270685,
11271396-11271570
Length = 444
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 471 PMNATPMDLE-LYPVRCARPTCSQPEPSYTXXVT 373
P+ MDL LY V C QPEPSY +T
Sbjct: 383 PVIRNTMDLRHLYQVAAVAVLCVQPEPSYRPLIT 416
>05_03_0488 - 14651532-14652265,14652404-14653988
Length = 772
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 218 GAAREPRHRPAHSHTLLQDGRWAAR-SSCGISRPTT 322
GA + HR S +L DG+W A+ S G+S+ +T
Sbjct: 561 GAKQTIIHRDVKSTNILLDGKWVAKVSDFGLSKVST 596
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 91 PPPLGSCTRARSQLASHRNSS 153
PP LGSC+R R A H N S
Sbjct: 221 PPELGSCSRLRVLKAGHNNLS 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,098,578
Number of Sequences: 37544
Number of extensions: 450112
Number of successful extensions: 1570
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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