Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P15
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-8|AAF60889.1|  187|Caenorhabditis elegans Hypothetical ...    29   3.6  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    29   6.3  

>AC024876-8|AAF60889.1|  187|Caenorhabditis elegans Hypothetical
           protein Y94H6A.8 protein.
          Length = 187

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 329 PPMWLVWIFRTSSSQPSVRPAEGCDCVLDDDE 234
           PP W  W+   +   PSV+P    D VL+  E
Sbjct: 124 PPEWHSWLHHITDDAPSVKPPPTQDWVLEHKE 155


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 185 DGLIPGARVVPGAAREPRHRPAHS-HTLLQDGRWAARSSCGISRPTT 322
           +G+  G   VPG  REP HRP  +  T   +G     S     RPTT
Sbjct: 210 NGITRGQTRVPGTTREPTHRPTTAGWTNGANGTTRDTSRGFTQRPTT 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,739
Number of Sequences: 27780
Number of extensions: 327064
Number of successful extensions: 857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)