Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P15
         (930 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.74 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 402 AGCTSGAHTLRGTTRGPSESHSS 470
           A  T   HT+R  T GP +SH S
Sbjct: 288 ASTTCSGHTVRCFTGGPRKSHES 310


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 198  GIK--PSHCFLLTTSQSAAISVRSELRASASTTAEWR 94
            G+K  P HC     +  A I++++ + +S S    WR
Sbjct: 1165 GVKSAPIHCQTEQDAPEAPIAIKALVMSSESILVSWR 1201


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 151 CYFCEKRAESEREYNC 104
           C  C++R E +  Y+C
Sbjct: 274 CSLCQRRFEEQGNYSC 289


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 14/58 (24%), Positives = 22/58 (37%)
 Frame = +1

Query: 451 HRSRIHRANFNTGXAEPARLLEGAAGRCXRCXRXSAATSPGELXXRXRTEQXHXPLRS 624
           HR R +  + ++G  E  R       +  +C R     SP +      TE+   P  S
Sbjct: 538 HRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASS 595


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 70  APLPRHGPPPLGSCT 114
           +PL R G PP G+ T
Sbjct: 391 SPLKREGGPPTGATT 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,249
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)