Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P13
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.51 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -2

Query: 612 PQXQTPXPXGXGGFFFPXXPXPPPPXPGKXKK 517
           P    P P    GF  P  P PPPP PG  KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQP-PPPPPPGYVKK 35


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = -1

Query: 787 PPPFXGXGPFXXPLXPXFFXXXPPIFGEXXXPPLXGXXPLPPPXXPGP 644
           PP      P   PL P      P   G    PPL    P PPP  P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP-APAP 482



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 29/132 (21%), Positives = 31/132 (23%), Gaps = 3/132 (2%)
 Frame = -1

Query: 709 GEXXXPPLXGXXPLPPPXXPGPXVFXXGKXXGXPKX--NPXPPXGGXFFFSXKXXPPPPX 536
           G    PP     P PPP    P            +   NP  P       S    PP   
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN 408

Query: 535 TWKXKKXXXXFXNFFXPXXXXXXXPXXXPXFPKXPFFXPXFFXXXPX-PPXFFFXXGXPX 359
             +             P       P   P  P      P      P  PP        P 
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468

Query: 358 PPPXGXXPPPXP 323
            PP    PPP P
Sbjct: 469 LPPAAPAPPPAP 480


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 324 GXGGGXXPXGGGXGXPKXKKKXGGXGXXXKKXGXKKGFXGKXGXXXG 464
           G  GG    GGG G  +   + G  G    + G + G  G  G   G
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
 Frame = -1

Query: 400 PXPPXFFFXXGXPXPPP----XGXXPPPXP 323
           P PP      G P PPP     G  PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 648 GPGFFXGGXGXGPQXQTPXPXGXGGF 571
           G GF  GG G G     P P G GGF
Sbjct: 187 GGGF--GGFGGGSGGPPPGPGGFGGF 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.145    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,074
Number of Sequences: 5004
Number of extensions: 33541
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)