Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P10
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    32   0.62 
Z68748-11|CAL63997.1|  193|Caenorhabditis elegans Hypothetical p...    29   5.8  
AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    29   5.8  
AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical ...    29   5.8  

>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 438  WNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRAS 334
            W K T   TPS S KP +  P R  P P   S+ S
Sbjct: 1980 WAKTTTSQTPSTSTKPTVTAPKRSDPIPIAPSQRS 2014


>Z68748-11|CAL63997.1|  193|Caenorhabditis elegans Hypothetical
           protein F13H10.9 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 752 EDXEKENPTLGSHEDL*KGVSNFLKPALKSSELDGDRNRFSLPPAE*SFRLMT-SECAAL 576
           E+  + + T+G +E+   GVSN      +S    G   RF    A  + RL T SE A  
Sbjct: 90  EESSRSHETIGQYEERITGVSNASNNNSRSGAATGIAQRFRDEEAAKNKRLDTISEIAMS 149

Query: 575 NDA 567
           ND+
Sbjct: 150 NDS 152


>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -2

Query: 461 RSGRGCYCGTS*PCLRRRAAPRSRECGSRSDSARARLRCLERAPAEAALSLW-RSLKSAD 285
           R G    CG+    +  R+    R+CGS        L C+   P      LW + ++ A+
Sbjct: 296 RCGHSRLCGSYVARIENRSISPCRKCGSVEGDVNHLLTCISSVPL-LPKDLWEKPVEVAE 354

Query: 284 PMALST 267
            + LST
Sbjct: 355 ALGLST 360


>AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical
           protein F59A7.1 protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 392 GFGEQLGVAGKVNLFHNNNHDLSAKGVRDQELSQRHPQRAQL 517
           GFG++   +  +  F+NNN D+   G     LS+RHP  A +
Sbjct: 245 GFGDKTTGSDSLQKFYNNN-DIPTCGSIILILSKRHPNNADI 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,034
Number of Sequences: 27780
Number of extensions: 308139
Number of successful extensions: 835
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)