Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P09
         (995 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.4  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
 Frame = +3

Query: 723 IRMXVPNXALRLSPXHXXPNPXX--PXPPSP-----CXPXXPXPLXPPXG-PPSXP 866
           + M  P   L L+     PNP    P P  P     C    P P  PP   PP  P
Sbjct: 135 VMMSPPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFP 190


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
 Frame = +3

Query: 723 IRMXVPNXALRLSPXHXXPNPXX--PXPPSP-----CXPXXPXPLXPPXGPP 857
           + M  P   L L+     PNP    P P  P     C    P P  PP   P
Sbjct: 135 VMMSPPGNVLNLTMPKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLP 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,598
Number of Sequences: 336
Number of extensions: 4336
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28340642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)