Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P09
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    38   0.002
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.027
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.047
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.063
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.77 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    26   7.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   9.5  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
 Frame = +3

Query: 792 PXPPSPCXPXXPXPLXPPXGPPSXPKXXP-FPXGXXXLPXPXIYISXRXXXPXVPXXXTS 968
           P P  P  P    P  PP  PPS P   P  P      P      +     P +P    +
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475

Query: 969 PPPXSXPPP 995
           PPP   P P
Sbjct: 476 PPPAPAPAP 484



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 23/80 (28%), Positives = 25/80 (31%)
 Frame = +3

Query: 756 LSPXHXXPNPXXPXPPSPCXPXXPXPLXPPXGPPSXPKXXPFPXGXXXLPXPXIYISXRX 935
           LS      NP  P PP P  P    P  PP G  S     P P     LP          
Sbjct: 379 LSSSRAVSNP--PAPP-PAIPGRSAPALPPLGNASRTSTPPVPT-PPSLPPSAPPSLPPS 434

Query: 936 XXPXVPXXXTSPPPXSXPPP 995
             P +P    + PP     P
Sbjct: 435 APPSLPMGAPAAPPLPPSAP 454


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 34.3 bits (75), Expect = 0.027
 Identities = 23/78 (29%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
 Frame = +3

Query: 783 PXXPXPPSPCXPXX---PXPLXPPXGPPSXP----KXXPFPXGXXXLPXPXIYISXRXXX 941
           P  P P S   P     P P  PP  P S P    K  P P        P   +      
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187

Query: 942 PXVPXXXTSPPPXSXPPP 995
           P +P      PP   PPP
Sbjct: 188 PSLPSAVPPMPPKVPPPP 205



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 27/94 (28%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
 Frame = +3

Query: 738 PNXALRLSPXHXXPNPXXPXPPSPCX--------PXXPXPLXPPXGPPSXPKXXPFPXGX 893
           P   LR  P    P P  P PPSP          P  P  L PP  P +  K  P     
Sbjct: 133 PQSELR-PPTSAPPRPSIP-PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190

Query: 894 XXLPXPXIYISXRXXXPXVPXXXTSPPPXSXPPP 995
                P             P   TS  P S  PP
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 18/57 (31%), Positives = 19/57 (33%)
 Frame = +2

Query: 593 PKSLXFPPEXXVXLXPTEIXPXDPVLXFHPPQLPAXXPTXPLXXKDXCXQXRPPALP 763
           P S   PP     L P    P  P +   PP  PA  P  P           PPA P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSI---PPPSPASAPPIPSKAPPIPSSLPPPAQP 177


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.5 bits (73), Expect = 0.047
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
 Frame = +3

Query: 756  LSPXHXXPNPXX-PXPPSPCXPXXPXPLXPPXGPPSXPKXXPFPXGXXXLPXPXIYISXR 932
            ++P H    P   P   +P     P P  PP   P  P   P P G    P P +  S  
Sbjct: 1681 MAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740

Query: 933  XXXP 944
               P
Sbjct: 1741 PSVP 1744


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.1 bits (72), Expect = 0.063
 Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
 Frame = +3

Query: 777  PNPXXPXPPSPCXPXXPXPLXPPXGPPSXPK------XXPFPXGXXXLPXPXIY---ISX 929
            P P    PP P       P+  P G P  PK        P P G   +P P +    +  
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA 1154

Query: 930  RXXXPXVPXXXTSPPPXSXP 989
                P VP    + PP   P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAP 1174



 Score = 30.7 bits (66), Expect = 0.33
 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
 Frame = +3

Query: 735  VPNXALRLSPXHXXPNPXXPXP-PSPCXPXXPXPL-XPPXGPPS-XPKXXPFPXGXXXLP 905
            VP  ++ + P    P+   P P PS   P  P P   PP   PS      P P G   +P
Sbjct: 1104 VPKPSVAVPPV-PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162

Query: 906  XPXIYI----SXRXXXPXVPXXXTSPPPXSXPPP 995
             P +      +     P VP      PP   PPP
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPP--VPPP 1194



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
 Frame = +3

Query: 777  PNPXXPXPPSPCXPXXPXPLXPPXGPPSXPK----XXPFPXGXXXLPXPXIYISXRXXXP 944
            P P    PP P       P+ PP   P  PK      P P      P P    +     P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP----TPSAGLP 1227

Query: 945  XVPXXXTSPPPXSXP 989
             VP      PP   P
Sbjct: 1228 PVPVPTAKAPPVPAP 1242



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 18/71 (25%), Positives = 22/71 (30%)
 Frame = +3

Query: 777  PNPXXPXPPSPCXPXXPXPLXPPXGPPSXPKXXPFPXGXXXLPXPXIYISXRXXXPXVPX 956
            P      P +P     P    P    PS     P P G   +P P +        P VP 
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSV------AAPPVPK 1106

Query: 957  XXTSPPPXSXP 989
               + PP   P
Sbjct: 1107 PSVAVPPVPAP 1117


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
 Frame = +3

Query: 735 VPNXAL-RLSPXHXXPNPXXPXPPSPCXPXXPXPLXPPXGPPSXPKXXPFP 884
           VP   L R  P    P P  P P  P  P  P P  P  G P  P   P P
Sbjct: 98  VPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPN-EPVP 147


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 17/67 (25%), Positives = 21/67 (31%)
 Frame = +3

Query: 792 PXPPSPCXPXXPXPLXPPXGPPSXPKXXPFPXGXXXLPXPXIYISXRXXXPXVPXXXTSP 971
           P  P    P    PL  P  PP  P   P       LP P   ++       +P    +P
Sbjct: 221 PEIPPTYTPKQADPLPAPP-PPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATP 279

Query: 972 PPXSXPP 992
                PP
Sbjct: 280 SQPPRPP 286


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = +3

Query: 777 PNPXXPXPPSPCXPXXPXPLXPP----XGPPSXPKXXP 878
           P P    PP+P     P P  PP     GPP  P   P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = +3

Query: 840 PPXGPPSXPKXXPFPXGXXXLPXPXIYISXRXXXPXVPXXXTSPPPXSXPPP 995
           PP  PP+     P P      P   I        P        PPP   PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 832 GXGXXGXQGLGGXGXXGFG 776
           G G  G  GLGG G  GFG
Sbjct: 227 GLGGAGLGGLGGAGLGGFG 245


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 406 EEAGTVPCLAGXPSXCXGF 350
           EEA  +PCL G P+ C G+
Sbjct: 901 EEADKIPCLCGAPT-CRGY 918


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 401 GWNCPLFG--WXPLLVSGVQRIKDYFEARKLCTTS*VREP 288
           G   PLF     PLL+S ++ +KD    RKL   + V +P
Sbjct: 514 GIYAPLFAPILIPLLISFIKEVKDMLRERKLHRVANVPKP 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,069
Number of Sequences: 5004
Number of extensions: 61323
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)