Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P09
         (995 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    28   0.38 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.7  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   3.5  

>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 0.38
 Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
 Frame = +3

Query: 777 PNPXXPXPPSPCXPXXPXPLXPPXGP---PSXPKXXPFPXGXXXLPXPXIYISXRXXXPX 947
           PNP    PP P     P  +  P  P   P  P   P   G    P P   +  R     
Sbjct: 64  PNPFTAGPPKPNISIPPPTMNMPPRPGMIPGMPGAPPLLMGPNG-PLPPPMMGMRPPPMM 122

Query: 948 VPXXXTSPPPXSXPPP 995
           VP     P      PP
Sbjct: 123 VPTMGMPPMGLGMRPP 138



 Score = 23.8 bits (49), Expect = 8.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 923 LXPPRXSXSPXPXXLPTTXFPP 988
           L PP     P P  +PT   PP
Sbjct: 109 LPPPMMGMRPPPMMVPTMGMPP 130


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 20/73 (27%), Positives = 22/73 (30%)
 Frame = +3

Query: 777 PNPXXPXPPSPCXPXXPXPLXPPXGPPSXPKXXPFPXGXXXLPXPXIYISXRXXXPXVPX 956
           P P  P    P  P  P P+ P   P + P   P   G    P P      R      P 
Sbjct: 209 PQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQP---GMQPRP-PSAQGMQRPPMMGQPP 264

Query: 957 XXTSPPPXSXPPP 995
               P P   P P
Sbjct: 265 PIRPPNPMGGPRP 277


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 19/71 (26%), Positives = 23/71 (32%)
 Frame = +3

Query: 783 PXXPXPPSPCXPXXPXPLXPPXGPPSXPKXXPFPXGXXXLPXPXIYISXRXXXPXVPXXX 962
           P  P PP       P    PP  P +  +   FP     L  P  + +     P      
Sbjct: 530 PPPPPPPGGAVLNIPPQFLPP--PLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPP---PA 584

Query: 963 TSPPPXSXPPP 995
             PPP   PPP
Sbjct: 585 PPPPPPMGPPP 595



 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 783 PXXPXPPSPCXPXXPXPLXPPXGP 854
           P  P    P  P  P P+ PP  P
Sbjct: 574 PNLPNAQPPPAPPPPPPMGPPPSP 597



 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 777 PNPXXPXPPSPCXPXXPXPLXPPXGPPSXP 866
           PN   P  P P  P  P P     GP   P
Sbjct: 577 PNAQPPPAPPPPPPMGPPPSPLAGGPLGGP 606


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 868,354
Number of Sequences: 2352
Number of extensions: 17440
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 109352334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)