Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P09
         (995 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           25   1.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           25   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 89  LTPRHHHRLQSRVEYQNLKNSLWXVVXE 6
           L  RH  R Q++ E+QNLK  +  V+ +
Sbjct: 113 LVERHKKRGQTKEEFQNLKEVMLEVLRQ 140


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 89  LTPRHHHRLQSRVEYQNLKNSLWXVVXE 6
           L  RH  R Q++ E+QNLK  +  V+ +
Sbjct: 113 LVERHKKRGQTKEEFQNLKEVMLEVLRQ 140


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
 Frame = +3

Query: 777 PNPXX-PXPPSPCXPXXPXPLXPPXGPPSXP 866
           P+P   P  P    P  P    PP GPP  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 762 PXHXXPNPXXPXPPSPCXPXXPXPLXPPXGPP 857
           P    P P      SP  P    P  P  GPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP 47



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +3

Query: 801 PSPCXPXXPXPLXPPXGPPSXPKXXPFPXGXXXLP 905
           P P       P  P  G P  P   P P G    P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 483 PQKTESPRSXXEXPPPGXXSGMP 551
           PQ+  SP +  + PPPG   G P
Sbjct: 34  PQRG-SPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,776
Number of Sequences: 438
Number of extensions: 6492
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)