Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P06
         (1037 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.029
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.81 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.81 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.029
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 643 PPPXPSPGXCXGXXXTPPPPPP 708
           PPP P PG        PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 33.1 bits (72), Expect = 0.066
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 643 PPPXPSPGXCXGXXXTPPPPPP 708
           PPP P P    G    PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = +1

Query: 574 KXXPPPPXRGGQXTNKXXKXXXXPPPXPSPGXCXGXXXTPPPPP 705
           K  PPPP      T         P P P P    G    PPPPP
Sbjct: 730 KSPPPPPPAVIVPT-----PAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +1

Query: 583 PPPPXRGGQXTNKXXKXXXXPPPXPSPGXCXGXXXTPPPPPP 708
           PPPP                PPP P  G        PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG------PPPPPPP 767



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 859 PPPXXXPPPPPPXPP 903
           P P    PPPPP PP
Sbjct: 754 PAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 878 PPXPPPPPP 904
           PP PPPPPP
Sbjct: 775 PPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.81
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 643 PPPXPSPGXCXGXXXTPPPPPP 708
           PPP P P         PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +1

Query: 859 PPPXXXPP--PPPPXPP 903
           PPP   PP  PPPP PP
Sbjct: 14  PPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.81
 Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 13/60 (21%)
 Frame = +1

Query: 571 KKXXPPPPX-----RGGQXTNKXXKXXXXPPPXPSP-GXCXGXXX-------TPPPPPPR 711
           KK  PPPP      RG             PPP P P     G           PPPPPPR
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
 Frame = +1

Query: 571 KKXXPPPPXRGGQXTNKXXKXXXXPPPXPS------PGXCXGXXXT---PPPPPPR 711
           K   PPP  R         K    PPP PS      P    G   +   PPPPPPR
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +1

Query: 583 PPPPXRGGQXTNKXXKXXXXPPPXPSPGXCXGXXXTPPPPPPR 711
           P PP        +       P P P P    G   +PP  PPR
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR 273


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 859 PPPXXXPPPPPPXP 900
           PPP   PPP PP P
Sbjct: 806 PPPAPLPPPAPPLP 819


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 862 PPXXXPPPPPPXPP 903
           P    PPPPPP PP
Sbjct: 184 PSDYNPPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 859 PPPXXXPPPPPPXPP 903
           P P   PPPPP  PP
Sbjct: 234 PLPAPPPPPPPTLPP 248


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +3

Query: 810  PP--PXSXFXXKKKXXTPXPPXXXXPPXPPXPP 902
            PP  P S    +    TP PP    PP P  PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 859  PPPXXXPPPPPPXPP 903
            PPP    PPPP  PP
Sbjct: 1708 PPPPMSVPPPPSAPP 1722



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 643  PPPXPSPGXCXGXXXTPPPPPP 708
            PPP  +P    G    PPPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 877 PPPPPPXPP 903
           PPPPPP PP
Sbjct: 306 PPPPPPPPP 314


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 878 PPXPPPPPP 904
           PP PPPPPP
Sbjct: 945 PPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,543
Number of Sequences: 5004
Number of extensions: 26078
Number of successful extensions: 291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)