Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P04
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    31   0.22 
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    27   3.5  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   4.7  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   6.2  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.2  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +1

Query: 562 YSGSALTPIPSAYLADKFGRKTT----LASRSYTLHNRLDTCYRSEVLANAVRRADFL 723
           Y+G A+ P+P  Y    F   +     +A R  +L   LD C    V++N++    FL
Sbjct: 59  YNGYAIPPLPRKYTVSSFSGGSLSPIFIARRMQSLQTFLDRCSTHPVISNSMHMYQFL 116


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 623 KLHWLLGAIPFIIGWILVIVAKSLPMLYVARIFSGL 730
           K+  L+G I       L+    S+PML VAR+  GL
Sbjct: 86  KVPMLIGLIFLTSATALLTFGNSVPMLIVARVLQGL 121


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 614 SEEKLHWLLGAIPFIIGWILVIVAKSLPMLYVARIFSG 727
           S  KL  L+G   F I  I V VAK +  + + R FSG
Sbjct: 197 SGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSG 234


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 717 FSQAWVXGVVYTVAPMYTGEIATNEVRXAL 806
           F   W  G+   + P+Y  EIA +++R  L
Sbjct: 188 FVIGWGVGIASLIIPLYLSEIAPSKIRGRL 217


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 458 LATVGRLLLYCILNQKKVQYQQTAYQGIMD 547
           L+   +++ YCILN++  ++ +T Y+ I D
Sbjct: 21  LSVANKIMFYCILNERAFKHYKT-YRRITD 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,987
Number of Sequences: 5004
Number of extensions: 55275
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)