Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P04
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458...    36   0.043
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391...    36   0.043
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758...    33   0.40 
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727...    29   3.7  
02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326...    29   6.5  
01_07_0304 - 42628086-42628104,42628828-42630263                       28   8.6  

>05_07_0152 +
           28044733-28045032,28045131-28045220,28045770-28045829,
           28045912-28045977,28046161-28046226,28046330-28046405,
           28046721-28046785,28046879-28046971,28047302-28047322,
           28047600-28047692,28047939-28047998,28048157-28048222,
           28048314-28048373,28048498-28048612,28048738-28048850
          Length = 447

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 635 LLGAIPFIIGWILVIVAKSLPMLYVARIFSGLG 733
           ++ AIP IIGW+ +  AK    LY+ R+  G G
Sbjct: 133 MIAAIPNIIGWLAISFAKDSSFLYMGRLLEGFG 165


>05_07_0151 +
           28038178-28038480,28038578-28038667,28039130-28039189,
           28039274-28039339,28039562-28039627,28039719-28039794,
           28039972-28040036,28040115-28040192,28040362-28040442,
           28040526-28040610,28040702-28040748,28040969-28041028,
           28041179-28041244,28041327-28041386,28041524-28041638,
           28041733-28041845
          Length = 476

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 635 LLGAIPFIIGWILVIVAKSLPMLYVARIFSGLG 733
           ++ A+P IIGW+ +  AK    LY+ R+  G G
Sbjct: 134 IIAAVPNIIGWLAISFAKDASFLYMGRLLEGFG 166


>10_08_1053 -
           22575281-22575409,22575516-22575653,22575786-22575884,
           22576281-22576361,22577171-22577233,22577473-22577520,
           22577622-22577990,22578082-22578183,22578290-22578414,
           22578500-22578566,22578817-22578895,22578928-22579079,
           22579182-22579223
          Length = 497

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 635 LLGAIPFIIGWILVIVAKSLPMLYVARIFSGLGYXSCVH 751
           +L ++ ++IG +L   A + P++ V R F G+G    +H
Sbjct: 120 ILSSVSYLIGALLTAAAPNFPIMVVGRFFYGIGIGLAMH 158


>02_02_0155 +
           7272563-7272630,7272934-7273031,7273491-7274057,
           7275121-7276085,7276201-7276388,7276497-7276938
          Length = 775

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 738 GVVYTVAPMYTGEIATNEVRXALSTLIXFN 827
           G+  T+ P+Y  E A +E+R  L+TL  F+
Sbjct: 140 GLAVTLVPLYISETAPSEIRGLLNTLPQFS 169


>02_01_0455 +
           3266123-3266258,3266348-3266670,3267083-3267661,
           3267866-3268336
          Length = 502

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 602 SPTNSEEKLHWLL--GAIPFIIGWILVIVAKSLPMLYVARIFSGLGYXSCVH 751
           SP +      W L   A+ ++IG IL  ++ +  +L   R+  G+G   C+H
Sbjct: 102 SPMSRAFGRKWTLFVAAVAYLIGAILGAISFNFIVLLTGRLLLGVGVGVCIH 153


>01_07_0304 - 42628086-42628104,42628828-42630263
          Length = 484

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 623 KLHWLLGAIPFIIGWILVIVAKSLPMLYVARIFSGLG 733
           +L  +L A+ F +G I++ ++ + PML   R  +G+G
Sbjct: 36  RLTIILAAVIFFVGAIMMGLSVNYPMLMAGRFVAGIG 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,479,159
Number of Sequences: 37544
Number of extensions: 327239
Number of successful extensions: 794
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)