Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P02
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    29   0.89 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   8.3  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   8.3  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +2

Query: 128 WRRSRPRHKYSHGSSHWPYHHYXPFXSLRSGKHVGHTFALVQPCQR-NATLGQHDEGAVV 304
           W+R + R K S+  S  P+H   P  + R  KH   T   V   QR +  L    E   V
Sbjct: 57  WKRRKRRLKGSNSDSDSPHHASNPHPNSRQ-KHQHQTSKSVPRSQRFSRELNVKKENKKV 115

Query: 305 EVPQHYKRRTRGRRQVSDIYSPGLVTNRKTST*KRKM 415
              Q  KR++R +          ++ +    T  +K+
Sbjct: 116 FSSQTTKRQSRKQSTALTTNDTSIILDDSLHTNSKKL 152


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 264  EMQHLDNMMKELSLKFPSIINEGRV 338
            E+++L NM+ EL  KFP +   GR+
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 219 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 338
           E   + + +W+++  +MQ  D   ++L   F  I N G++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,539
Number of Sequences: 5004
Number of extensions: 53833
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)