Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_P02
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0611 + 4420873-4422207 30 2.9
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 3.8
09_02_0414 - 8825575-8826654,8826737-8827144 29 3.8
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 5.0
11_03_0018 - 8996642-8996776,8997255-8997497 29 6.6
12_02_0132 - 14054331-14054969 28 8.7
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 28 8.7
03_06_0488 - 34281623-34283431 28 8.7
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 28 8.7
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 24 PTSGPSFHTFCVSFATLLHAPTSSCSPXVFVAELAG-GGLGRATSTPMARHI 176
PT G +FH C+ L H+ C V A A + STP+AR +
Sbjct: 140 PTCGHAFHVPCIDAWLLSHSTCPICRGSVLAAAAAADDDDDSSASTPVARRV 191
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -3
Query: 123 VPQQTXKASMTTLERATTXQRRRKKYERKAP 31
+P++ KAS++T +R T Q+ RK+ +KAP
Sbjct: 1168 IPEEKQKASVSTSKRGATPQKSRKR--KKAP 1196
>09_02_0414 - 8825575-8826654,8826737-8827144
Length = 495
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 246 WSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDK----YQISIHLAWLRTERHQ 398
W + N++ H ++ + K+PS +EG + DK Y H+ +L +H+
Sbjct: 176 WQRMINKVAHFNDCWCRVMAKYPSGQSEGMQQMDKTWLMYNKEAHVMYLEEAKHK 230
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 213 VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQIS 362
+++++L+ LA+E+Q D+++ EL K S + R+E + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347
>11_03_0018 - 8996642-8996776,8997255-8997497
Length = 125
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 237 HSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLAWLRTERHQR 401
+S +S + N MQ + ++KEL S+ N+ + DK++ IH + + E H++
Sbjct: 18 NSSFSGIDNIMQPSE-ILKELEFNGESLPNQVKEAIDKHKDKIHYTYYKWEIHEK 71
>12_02_0132 - 14054331-14054969
Length = 212
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 24 PTSGPSFHTFCVSFATLLHAPTSSCSPXVFVAELAGGG 137
P G +FH C+ HA C V VA GGG
Sbjct: 172 PACGHAFHAACIDGWLRAHATCPVCRADVKVAAGGGGG 209
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 27 TSGPSFHTFCVSFATLLHAPTSSCSPXVFVAELAGGG 137
T+G + + A L + SS SP +F + AGGG
Sbjct: 39 TAGSKYQANLQALAATLPSTASSSSPALFAKDAAGGG 75
>03_06_0488 - 34281623-34283431
Length = 602
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 94 HARLXCLLRNWLAAVSAAPQVLPWLVTLAVSPLRPL 201
HA L R + A+ SAAP +L LVT + P PL
Sbjct: 51 HANSLVLTRLFAASASAAPALLDPLVTALLRPSVPL 86
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 82 LQRRHARLXCLLRNWLAAVSAAPQVLP-WLVTLAVSPLRPLQXLTFGKACWTHIRFGPTL 258
++ +H R C L AA +AA P W P + L G+A W H T+
Sbjct: 155 VREQHIRQQCRLGQLYAAAAAAAASSPTWPPPAWDWPHDDNRGLVLGQAVWAHFAAASTV 214
Query: 259 P 261
P
Sbjct: 215 P 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,226
Number of Sequences: 37544
Number of extensions: 381800
Number of successful extensions: 1084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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