Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O24
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    58   2e-09
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    56   5e-09
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    42   1e-04
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    38   0.002
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    38   0.002
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    31   0.31 

>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 32/77 (41%), Positives = 44/77 (57%)
 Frame = +3

Query: 237 PNDTEQAVIYAXEAGYTHIDTAYKYGIEDQVGRALTXKFSEGLTRESIFITTKLWNSYHE 416
           PN T+ AV  A + GY HID A  YG ED+VG  +      G+ R+ I++T+KLW + H 
Sbjct: 36  PNQTKNAVKTALQYGYRHIDAAAIYGNEDEVGDGIK---ESGVPRKDIWVTSKLWCNAHA 92

Query: 417 RXQVIPALXKSLXKSQL 467
              V  AL K+L   +L
Sbjct: 93  PEAVPKALEKTLKDLKL 109



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 554 TWRGMIXAKKLGLXKSIGLSNFXXEQIQRIIDSGXEKP 667
           TW+ M    + G  + IGLSNF    ++RI+     KP
Sbjct: 148 TWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKP 185


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 29/71 (40%), Positives = 43/71 (60%)
 Frame = +3

Query: 240 NDTEQAVIYAXEAGYTHIDTAYKYGIEDQVGRALTXKFSEGLTRESIFITTKLWNSYHER 419
           ++T+ AV  A +AGY HIDTA+ YG E ++G  +      G+ R  I++T+KLW + H  
Sbjct: 36  DETKNAVCAALKAGYRHIDTAHIYGNEKEIGEGIR---ESGVPRTDIWVTSKLWCNAHRA 92

Query: 420 XQVIPALXKSL 452
             V  AL K+L
Sbjct: 93  GLVPLALEKTL 103



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 554 TWRGMIXAKKLGLXKSIGLSNFXXEQIQRIIDSGXEKP 667
           TW+ M    + G  + IG+SNF  E + R++     KP
Sbjct: 147 TWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKP 184


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 240 NDTEQAVIYAXEAGYTHIDTAYKYGIEDQVGRALTXKFSE-GLTRESIFITTKLWN 404
           N+    V  A ++GY HIDTA  YG ED  G+A+     +  + R  IF+T+KL N
Sbjct: 32  NECYGLVTQALDSGYRHIDTAAVYGNEDICGKAIVDWCEKNNVKRTDIFLTSKLAN 87


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 255 AVIYAXEAGYTHIDTAYKYGIEDQVGRALTXKFSE--GLTRESIFITTKL 398
           +V  A + GY HID+A  Y  E   GRA+  KF E  G  RE I+ T+KL
Sbjct: 32  SVYAALQCGYRHIDSAQMYHNEADCGRAI-LKFMEETGTKREDIWFTSKL 80



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 542 DFLXTWRGMIXAKKLGLXKSIGLSNFXXEQIQRIIDS 652
           D + +W+ +    + G  ++IG+SNF    IQ ++DS
Sbjct: 116 DRIESWKALEKGVEEGKLRAIGVSNFGPHHIQELLDS 152


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 25/64 (39%), Positives = 34/64 (53%)
 Frame = +3

Query: 267 AXEAGYTHIDTAYKYGIEDQVGRALTXKFSEGLTRESIFITTKLWNSYHERXQVIPALXK 446
           A  AG+ HID A  YG E++VG AL       + R  +FIT+K+    H    +  AL +
Sbjct: 40  ALAAGFIHIDCAEVYGNEEEVGVALK---EANVPRSKLFITSKV---MHNVDNIPEALNE 93

Query: 447 SLXK 458
           SL K
Sbjct: 94  SLRK 97



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 557 WRGMIXAKKLGLXKSIGLSNFXXEQIQRIIDSGXEKP 667
           W+ M  A   GL  S+G+SNF    ++ ++ +    P
Sbjct: 125 WKAMETALGTGLVHSVGVSNFRIPDLEELLKTSTITP 161


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 548 LXTWRGMIXAKKLGLXKSIGLSNFXXEQIQRIIDSGXEKP 667
           + +WR ++  +K G    IG+SN+    ++ II  G   P
Sbjct: 119 IESWRALLQHQKEGRINKIGVSNYNIHHLEEIISLGLPLP 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,680
Number of Sequences: 5004
Number of extensions: 48604
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)