Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O24
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    29   0.080
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    29   0.080
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    27   0.25 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 0.080
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 248 RASCHIRXGSWIHTHRHRIQIWNRGPSGKGPDXEILRRTYK 370
           R  CHI   S+ +T R     WN GP+  G   E+    +K
Sbjct: 149 RQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFK 189


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 0.080
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 248 RASCHIRXGSWIHTHRHRIQIWNRGPSGKGPDXEILRRTYK 370
           R  CHI   S+ +T R     WN GP+  G   E+    +K
Sbjct: 88  RQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFK 128


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 237 PNDTEQAVIYAXEAGYTHIDTAYKYGIEDQVGRALTXKFSE 359
           P DT++  +     GYT  D  YK+    QV  A   K S+
Sbjct: 138 PMDTQRCPLQFGSFGYTKRDVIYKWNSARQVAIAEDMKLSQ 178


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 248 RASCHIRXGSWIHTHRHRIQIWNRGPSGKGPDXEI 352
           R  CHI   S+ +T R     WN G    G   E+
Sbjct: 149 RQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEV 183


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 325 WSSIPYLYAVSMCVYPASXAYMTA 254
           WS  PY++  + C+  +  A  +A
Sbjct: 115 WSHFPYVFGEAFCIIQSFAAETSA 138


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 257 CHIRXGSWIHT 289
           C I  GSW+H+
Sbjct: 183 CRINFGSWVHS 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,094
Number of Sequences: 438
Number of extensions: 3601
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)