Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O21
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.1  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   2.8  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   8.5  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 355 PAFPKSPSXFCPQVPKTLPPPICLSXXTSTRXLALRIAP 239
           P+ P  PS   P  PK  PPP+  +   +T       AP
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAP 223


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 537 FHPRSATDLSI*VNSGLXILVCPV*ASGRSWXCXLQVLKLWC 412
           F P S  DL + + S L +L+ P  ++ ++W     V K++C
Sbjct: 267 FKPNSTPDLRLSIESCLDLLLHPPSSAQKNWSWIKHVGKVFC 308


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 259 LALRIAPLIELFFPRKSERVPXNF 188
           L  R+ PL EL++ R +  VP NF
Sbjct: 371 LMKRLFPLAELYYKRMATDVPLNF 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,524
Number of Sequences: 5004
Number of extensions: 48385
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)