Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O21
         (913 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU069463-1|ABU25227.1| 1250|Homo sapiens Plk1-interacting checkp...    31   5.8  
BC111486-1|AAI11487.1| 1250|Homo sapiens excision repair cross-c...    31   5.8  
AK074719-1|BAC11160.1| 1106|Homo sapiens protein ( Homo sapiens ...    31   5.8  

>EU069463-1|ABU25227.1| 1250|Homo sapiens Plk1-interacting
           checkpoint helicase protein.
          Length = 1250

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 355 PAFPKSPSXFCPQVPK--TLPPPICLSXXTSTRXLALRIAPLIELFFPRKSERVPXNFLP 182
           P FP S    CP++ K    P P+  +  T    ++ ++A ++    P++ E+   + + 
Sbjct: 734 PVFPSSTKKKCPKLNKPQPQPSPLLSTHHTQEEDISSKMASVVIDDLPKEGEKQDLSSIK 793

Query: 181 FNTTT 167
            N TT
Sbjct: 794 VNVTT 798


>BC111486-1|AAI11487.1| 1250|Homo sapiens excision repair
           cross-complementing rodent repair deficiency,
           complementation g protein.
          Length = 1250

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 355 PAFPKSPSXFCPQVPK--TLPPPICLSXXTSTRXLALRIAPLIELFFPRKSERVPXNFLP 182
           P FP S    CP++ K    P P+  +  T    ++ ++A ++    P++ E+   + + 
Sbjct: 734 PVFPSSTKKKCPKLNKPQPQPSPLLSTHHTQEEDISSKMASVVIDDLPKEGEKQDLSSIK 793

Query: 181 FNTTT 167
            N TT
Sbjct: 794 VNVTT 798


>AK074719-1|BAC11160.1| 1106|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90238 fis, clone NT2RM2000632, weakly similar to
           EXCISION REPAIR PROTEIN ERCC-6. ).
          Length = 1106

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 355 PAFPKSPSXFCPQVPK--TLPPPICLSXXTSTRXLALRIAPLIELFFPRKSERVPXNFLP 182
           P FP S    CP++ K    P P+  +  T    ++ ++A ++    P++ E+   + + 
Sbjct: 590 PVFPSSTKKKCPKLNKPQPQPSPLLSTHHTQEEDISSKMASVVIDDLPKEGEKQDLSSIK 649

Query: 181 FNTTT 167
            N TT
Sbjct: 650 VNVTT 654


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,510,751
Number of Sequences: 237096
Number of extensions: 1981892
Number of successful extensions: 3572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3571
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)