Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O21
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 563 WIXTPLFCRWYGLQG 607
           W+  PLFC+ Y + G
Sbjct: 118 WVLGPLFCQIYAMLG 132


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 563 WIXTPLFCRWYGLQG 607
           W+  PLFC+ Y + G
Sbjct: 84  WVLGPLFCQIYAMLG 98


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 377 IKDLSVVTSFSQESIIXLSPSAQDLASPHL 288
           +KDL  V S+ QE    + PS Q     HL
Sbjct: 158 VKDLVRVVSWLQEPSFYIYPSLQGDGKFHL 187


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 377 IKDLSVVTSFSQESIIXLSPSAQDLASPHL 288
           +KDL  V S+ QE    + PS Q     HL
Sbjct: 158 VKDLVRVVSWLQEPSFYIYPSLQGDGKFHL 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,310
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)