Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O20
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/61 (27%), Positives = 18/61 (29%)
 Frame = +1

Query: 679 PPPPPPXXXGGGGXXXFFFFXXXXXXXXXPPPPXXXXXXXGGGGGXXXPPPXXKKXKTPP 858
           PPPPPP      G                PPPP           G    PP  +    PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP------RSNAAGSIPLPPQGRSAPPPP 364

Query: 859 P 861
           P
Sbjct: 365 P 365


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 501 PPPPPXXXXPPPPP 542
           PPP P    PPPPP
Sbjct: 752 PPPAPIMGGPPPPP 765



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 502 PPPPPXXXPPPLPPXXFXXXGGGP 573
           PPP P    PP PP      G GP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +1

Query: 679 PPPPPPXXXGGGGXXXFFFFXXXXXXXXXPPPPXXXXXXXGGGGGXXXPPP 831
           PPPPPP                       PPPP       G G     PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 502 PPPPPXXXPPPLPP 543
           PPPPP   PP  PP
Sbjct: 12  PPPPPGFEPPSQPP 25


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/63 (30%), Positives = 19/63 (30%)
 Frame = -2

Query: 840 FXGXGGXXXSPPPPPXXXXXXGGGGXXXXXXXXXKKKKXXXXPPPXPXGGGGXGGXXXXF 661
           F G GG    PPP P      GG G                 P     G GG GG    F
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG--HGGFGGGPGGFEGGPGGFGGGPGGF 247

Query: 660 XXG 652
             G
Sbjct: 248 GGG 250



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -3

Query: 860 GGGVXFFXXXGGGXXXPPPPPXXXXXXXGGGG 765
           GGG   F   GGG   PPP P       G GG
Sbjct: 187 GGG---FGGFGGGSGGPPPGPGGFGGFGGFGG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,172
Number of Sequences: 5004
Number of extensions: 33154
Number of successful extensions: 280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)