Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O19
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   168   8e-43
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   168   8e-43
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   2.0  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   2.6  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   8.0  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  168 bits (409), Expect = 8e-43
 Identities = 82/124 (66%), Positives = 92/124 (74%)
 Frame = +2

Query: 134 LGPQHLVGATVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 313
           +GPQ   G  VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 314 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 493
           AAQD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 494 SDST 505
           +DST
Sbjct: 125 TDST 128


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  168 bits (409), Expect = 8e-43
 Identities = 82/124 (66%), Positives = 92/124 (74%)
 Frame = +2

Query: 134 LGPQHLVGATVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 313
           +GPQ   G  VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 314 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 493
           AAQD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 494 SDST 505
           +DST
Sbjct: 125 TDST 128


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 236 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 337
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 165 CLVXHTFSLHSMTHSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPTLLCWR 317
           CLV  T S++ + +  ++          VSLV    +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 799 TCLXQLIMVTNXAIASQISQXKHFFH 722
           +CL  L   TN  I  ++   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,417
Number of Sequences: 5004
Number of extensions: 49819
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)