Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_O19
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 175 5e-44
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 162 3e-40
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 153 2e-37
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 2e-06
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 2.8
09_04_0520 + 18286435-18287279,18287818-18288697 29 6.4
08_02_1092 + 24267737-24268641,24269005-24269884 29 6.4
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 8.4
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 175 bits (425), Expect = 5e-44
Identities = 87/126 (69%), Positives = 95/126 (75%)
Frame = +2
Query: 128 VPLGPQHLVGATVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAA 307
V LGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAA
Sbjct: 37 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 96
Query: 308 MLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 487
MLA+QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP
Sbjct: 97 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 156
Query: 488 VPSDST 505
VP+DST
Sbjct: 157 VPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 162 bits (394), Expect = 3e-40
Identities = 87/137 (63%), Positives = 95/137 (69%), Gaps = 11/137 (8%)
Frame = +2
Query: 128 VPLGPQHLVGATVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAA 307
V LGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAA
Sbjct: 15 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 74
Query: 308 MLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI----- 472
MLA+QDVA++CK LGITALHIKLRA AQ MKIGRI
Sbjct: 75 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVL 134
Query: 473 ------EDVTPVPSDST 505
EDVTPVP+DST
Sbjct: 135 SIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 153 bits (371), Expect = 2e-37
Identities = 77/115 (66%), Positives = 84/115 (73%)
Frame = +2
Query: 128 VPLGPQHLVGATVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAA 307
V LGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAA
Sbjct: 14 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 73
Query: 308 MLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 472
MLA+QDVA++CK LGITALHIKLRA AQ MKIGRI
Sbjct: 74 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +2
Query: 251 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 343
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 251 VTGGMKVKADRDEASPYAAMLAAQDVA 331
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 358 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 468
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 180 CATPNTVAPTKCWGPR 133
C P+ VAPT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 180 CATPNTVAPTKCWGPR 133
C P+ VAPT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 140 PQHLVGATVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 271
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,983
Number of Sequences: 37544
Number of extensions: 372592
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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