Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_O16
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 115 5e-26
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 115 5e-26
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 115 5e-26
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 115 5e-26
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 115 5e-26
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 115 5e-26
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 115 5e-26
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 109 2e-24
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 107 1e-23
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 105 4e-23
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 97 1e-20
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 97 1e-20
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 96 3e-20
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 96 3e-20
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 47 2e-05
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 46 5e-05
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 36 0.050
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 34 0.15
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 1.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 1.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 1.1
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 31 1.1
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 30 2.5
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 30 2.5
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 30 2.5
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 30 2.5
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 30 2.5
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 7.6
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 116 bits (280), Expect = 2e-26
Identities = 68/129 (52%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGP 289
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG---- 56
Query: 290 EQERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPK 460
++ + + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPK 114
Query: 461 GQQGRKMTQ 487
+ KMTQ
Sbjct: 115 ANR-EKMTQ 122
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 100
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 101 EHPVL-LTEAP-LNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTGIV--- 153
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 154 --LDSGDGVTHT-VPIYEGYALPHAILRL 179
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 115 bits (276), Expect = 5e-26
Identities = 67/129 (51%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGP 289
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG---- 56
Query: 290 EQERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPK 460
++ + + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPK 114
Query: 461 GQQGRKMTQ 487
+ KMTQ
Sbjct: 115 ANR-EKMTQ 122
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 100
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 101 EHPVL-LTEAP-LNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTGVV--- 153
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 154 --LDSGDGVTHT-VPIYEGYALPHAILRL 179
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 115 bits (276), Expect = 5e-26
Identities = 67/129 (51%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGP 289
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG---- 56
Query: 290 EQERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPK 460
++ + + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPK 114
Query: 461 GQQGRKMTQ 487
+ KMTQ
Sbjct: 115 ANR-EKMTQ 122
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 100
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 101 EHPVL-LTEAP-LNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTGVV--- 153
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 154 --LDSGDGVTHT-VPIYEGYALPHAILRL 179
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 115 bits (276), Expect = 5e-26
Identities = 67/129 (51%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGP 289
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG---- 56
Query: 290 EQERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPK 460
++ + + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPK 114
Query: 461 GQQGRKMTQ 487
+ KMTQ
Sbjct: 115 ANR-EKMTQ 122
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 100
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 101 EHPVL-LTEAP-LNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTGVV--- 153
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 154 --LDSGDGVTHT-VPIYEGYALPHAILRL 179
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 115 bits (276), Expect = 5e-26
Identities = 67/129 (51%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGP 289
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG---- 56
Query: 290 EQERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPK 460
++ + + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPK 114
Query: 461 GQQGRKMTQ 487
+ KMTQ
Sbjct: 115 ANR-EKMTQ 122
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 100
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 101 EHPVL-LTEAP-LNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTGVV--- 153
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 154 --LDSGDGVTHT-VPIYEGYALPHAILRL 179
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 115 bits (276), Expect = 5e-26
Identities = 66/129 (51%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGP 289
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG---- 56
Query: 290 EQERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPK 460
++ + + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPK 114
Query: 461 GQQGRKMTQ 487
+ KMTQ
Sbjct: 115 ANR-EKMTQ 122
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 100
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 101 EHPVL-LTEAP-LNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTGIV--- 153
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 154 --LDSGDGVTHT-VPIYEGYALPHAILRL 179
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 115 bits (276), Expect = 5e-26
Identities = 67/129 (51%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGP 289
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG---- 56
Query: 290 EQERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPK 460
++ + + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPK 114
Query: 461 GQQGRKMTQ 487
+ KMTQ
Sbjct: 115 ANR-EKMTQ 122
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 100
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 101 EHPVL-LTEAP-LNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTGVV--- 153
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 154 --LDSGDGVTHT-VPIYEGYALPHAILRL 179
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 115 bits (276), Expect = 5e-26
Identities = 67/129 (51%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGP 289
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG---- 56
Query: 290 EQERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPK 460
++ + + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPK 114
Query: 461 GQQGRKMTQ 487
+ KMTQ
Sbjct: 115 ANR-EKMTQ 122
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 100
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 101 EHPVL-LTEAP-LNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTGVV--- 153
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 154 --LDSGDGVTHT-VPIYEGYALPHAILRL 179
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 109 bits (263), Expect = 2e-24
Identities = 77/149 (51%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE
Sbjct: 28 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPE 86
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEA P PK NR E+ +IMF N+P + G +G
Sbjct: 87 EHPVL-LTEA-PLNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTG----- 137
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 138 VVLDSGDGVTHT-VPIYEGYALPHAILRL 165
Score = 76.2 bits (179), Expect = 3e-14
Identities = 49/111 (44%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Frame = +2
Query: 164 KAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGPEQERYPHSEVPHRARYHH 343
+AGFAGDDAPRAVFPSIVGRPRHQG G + G ++ + + + H
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG----DEAQSKRGILTLKYPIEH 60
Query: 344 QTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPKGQQGRKMTQ 487
W KIWHHTFYN P PVL+ + P NPK + KMTQ
Sbjct: 61 GIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEA-PLNPKANR-EKMTQ 108
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 107 bits (257), Expect = 1e-23
Identities = 75/149 (50%), Positives = 88/149 (59%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPE 413
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELR+APE
Sbjct: 41 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRIAPE 99
Query: 414 GAPXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRV 593
P TEAP PK NR E+ +IMF N+P + G +G
Sbjct: 100 EHPVL-LTEAP-LNPKSNR-EKMTQIMF-ETFNTPAMYVNIQAVLSLYASGRTTGIV--- 152
Query: 594 SCSNSGRWVSXTPLPIYEGYALPQAIFRL 680
++G V+ T +PIYEGYALP AI RL
Sbjct: 153 --LDTGDGVTHT-VPIYEGYALPHAIQRL 178
Score = 105 bits (253), Expect = 3e-23
Identities = 62/127 (48%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Frame = +2
Query: 116 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGPERLLRG*RGPEQ 295
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG G + G ++
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG----DE 57
Query: 296 ERYPHSEVPHRARYHHQTGMTW---RKIWHHTFYN*AACRPRRSTPVLVHRSPPSNPKGQ 466
+ + + H W KIWHHTFYN P PVL+ + P NPK
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEH-PVLLTEA-PLNPKSN 115
Query: 467 QGRKMTQ 487
+ KMTQ
Sbjct: 116 R-EKMTQ 121
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 105 bits (252), Expect = 4e-23
Identities = 75/146 (51%), Positives = 85/146 (58%)
Frame = +3
Query: 243 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPEGAP 422
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T E+ ELRVAPE P
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD-DMEKIWHHTFYNELRVAPEEHP 59
Query: 423 XCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRVSCS 602
TEA P PK NR E+ +IMF N+P + G +G
Sbjct: 60 VL-LTEA-PLNPKANR-EKMTQIMF-ETFNTPAMYVAIQAVLSLYASGRTTG-----VVL 110
Query: 603 NSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ T +PIYEGYALP AI RL
Sbjct: 111 DSGDGVTHT-VPIYEGYALPHAILRL 135
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 238
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 78.6 bits (185), Expect = 5e-15
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 344
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 238
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 78.6 bits (185), Expect = 5e-15
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 344
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 78.6 bits (185), Expect = 5e-15
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 344
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 78.6 bits (185), Expect = 5e-15
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +3
Query: 234 RGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 344
+GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 42 QGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Frame = +2
Query: 116 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 232
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKY 43
Score = 46.4 bits (105), Expect = 3e-05
Identities = 43/147 (29%), Positives = 68/147 (46%)
Frame = +3
Query: 240 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPEGA 419
VM G D ++G +A+S RG+ +++YP+EHGI+ + +L++ PE
Sbjct: 46 VMAGGLDGDIFIGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEH 105
Query: 420 PXCWFTEAPPQTPKXNRGER*PRIMF*XXXNSPRPMXRRHSXAVXSXPGTPSGSYHRVSC 599
P T+A P P NR ER I F N P + + G +G
Sbjct: 106 PVL-LTDA-PLNPLKNR-ERSAEIFF-ETFNVPALYIQMQAVLSLYATGRTTG-----VV 156
Query: 600 SNSGRWVSXTPLPIYEGYALPQAIFRL 680
+SG V+ +PI +G+A+ AI R+
Sbjct: 157 LDSGDGVTHA-VPIVKGFAMKHAIQRM 182
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 226
+VVDNG+G K G+AG + P +FPS+VGRP
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
Score = 31.5 bits (68), Expect = 0.82
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +3
Query: 261 KDSYVGDEAQSKRGILTLKYPIEHGIITKLG*HGERSGTTPSTIELRVAPEGAPXCWFTE 440
KD VG+E R +L + YP+++GI+ T +L + P+ TE
Sbjct: 53 KDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLL-LTE 111
Query: 441 APPQTPKXNRGER*PRIMF 497
PP P NR E+ ++MF
Sbjct: 112 -PPLNPNSNR-EKMFQVMF 128
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 35.5 bits (78), Expect = 0.050
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 110 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 217
M + A V+DNG+G K G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 240 VMVGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGII 341
V G+ D ++GDEA S T+KYPI HGI+
Sbjct: 56 VGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIV 90
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 119 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 217
D+V+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.82
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 141 STMAPACARPVSPATTRPAPSSRP 212
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 288 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 154
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 288 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 154
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 288 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 154
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 288 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 154
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 69 HTSVPNTNTHKVQRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPSWVALATR 236
H + +++T + A RL S +AP A P S A TR APS + VA R
Sbjct: 210 HYKIGSSSTSAPPKTAAGAPKRLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRR 265
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 419 CSFGGDTQLNCRRCGARSFSMSSQFGDDTVL 327
CS GGD ++NC R G + S+ F DD L
Sbjct: 162 CS-GGDDEVNCTRRGHENMQSSTDFHDDVHL 191
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 419 CSFGGDTQLNCRRCGARSFSMSSQFGDDTVL 327
CS GGD ++NC R G + S+ F DD L
Sbjct: 162 CS-GGDDEVNCTRRGHENMQSSTDFHDDVHL 191
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 419 CSFGGDTQLNCRRCGARSFSMSSQFGDDTVL 327
CS GGD ++NC R G + S+ F DD L
Sbjct: 162 CS-GGDDEVNCTRRGHENMQSSTDFHDDVHL 191
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 419 CSFGGDTQLNCRRCGARSFSMSSQFGDDTVL 327
CS GGD ++NC R G + S+ F DD L
Sbjct: 162 CS-GGDDEVNCTRRGHENMQSSTDFHDDVHL 191
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 288 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPA 175
GPR P P +P P G P G+ +RG P+
Sbjct: 170 GPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPS 207
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 306 GYLSCSGPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 154
G C P P P +P P G P G + +GA++P +P+ P
Sbjct: 112 GCTGCCNPGPPGPG-GRPGKPGTPGKPGAPGNPGASGKGAAAPCEPSTPPP 161
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +2
Query: 224 PRHQGRDGRYGPERL--LRG*RGPEQERYPHSEVPHRARYHH 343
PR G GR+GP G GP + P R +HH
Sbjct: 376 PRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHGHHH 417
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 56 AAVESYQRSQHKHTQSSKMCDDDV--AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 229
++ E +Q+ K+ S + + AL N KA + G D P+A F I+G
Sbjct: 6 SSCEEFQKINRKYVTLSLLIYNFYFNLALGTINCFHFIKASYLGHDTPQATFREIIGNKE 65
Query: 230 HQG 238
++G
Sbjct: 66 YRG 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,678,908
Number of Sequences: 27780
Number of extensions: 405351
Number of successful extensions: 1584
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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