Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O14
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.6  
03_01_0515 - 3864796-3865425                                           30   2.8  
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148...    24   7.3  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    28   8.6  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +1

Query: 619 AVWXXFPXPPPPPXXX*XKIPPXFXGGXXPPXXXIKXPXXXPPXK 753
           AV    P PPPPP       PP       PP    K P   PP K
Sbjct: 307 AVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAK 351


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +1

Query: 610 PKXAVWXXFPXPPPPPXXX*XKIPPXFXGGXXPPXXXIKXPXXXPP 747
           P  A     P PPPPP       PP       PP      P   PP
Sbjct: 62  PPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPP 107


>01_06_1596 -
           38514278-38514346,38514547-38514705,38514776-38514898,
           38514985-38515047,38515248-38515352,38515487-38515586,
           38515716-38515786,38516329-38516385,38516830-38516907,
           38516975-38517049,38517180-38517230,38517453-38517466,
           38517516-38517616,38517703-38517764,38518346-38518372,
           38518901-38519581
          Length = 611

 Score = 23.8 bits (49), Expect(2) = 7.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 637 PXPPPPPXXX*XKIPP 684
           P PPPPP      +PP
Sbjct: 141 PPPPPPPLPPMQHVPP 156



 Score = 23.0 bits (47), Expect(2) = 7.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 634 FPXPPPPP 657
           FP PPPPP
Sbjct: 138 FPMPPPPP 145


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 637 PXPPPPPXXX*XKIPPXFXGGXXP 708
           P PPPPP     ++PP + G   P
Sbjct: 84  PPPPPPPQQVQVQVPPQYGGVPNP 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,016
Number of Sequences: 37544
Number of extensions: 198976
Number of successful extensions: 2386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)