Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O13
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   314   5e-86
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    30   2.1  
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047           29   3.7  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    29   4.9  
08_02_0478 + 17621678-17623768                                         28   8.6  
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989...    28   8.6  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  314 bits (772), Expect = 5e-86
 Identities = 152/191 (79%), Positives = 166/191 (86%)
 Frame = +3

Query: 138 LNXFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 317
           LN  LTR LAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRIRELTSVVQKRFN P
Sbjct: 23  LNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 82

Query: 318 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 497
           E  VELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSG
Sbjct: 83  ENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 142

Query: 498 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 677
           KLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGIKVKIML WD +GK GP
Sbjct: 143 KLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGP 202

Query: 678 KKPQPDHILVN 710
             P PD + ++
Sbjct: 203 MTPLPDLVTIH 213


>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = -2

Query: 620 YSLSEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 441
           + L++  + GS  +++   V R D +++Y+    G ++     +NN +++G   HD   N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798

Query: 440 TIASTTYSETSDKLVS 393
            I         ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814


>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
          Length = 604

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 602 ASQTRSTRNQGQNHVAVGPARQERXEEATTRPHPG 706
           A +T S R  G++  +  P R+E  +  T RP PG
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPG 489


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -1

Query: 531 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 427
           T L  H   AA    Q H HGH      G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280


>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 528 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 623
           K + GL+IHSG   ND+V+++   +  + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452


>01_07_0132 -
           41298184-41298558,41298648-41298729,41298850-41298977,
           41299059-41299157,41299279-41299434,41300709-41300783,
           41301962-41302137,41303210-41303252,41303336-41303503,
           41303584-41303731,41306316-41306587
          Length = 573

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/75 (20%), Positives = 35/75 (46%)
 Frame = +3

Query: 417 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 596
           A R A  G++  + + G  G     SG+ RGQ  +++  ++G +        +Y++ A  
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531

Query: 597 HVLLRQGVLGIKVKI 641
            +L  +    + +++
Sbjct: 532 EILGEEVARNVTLRV 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,193,663
Number of Sequences: 37544
Number of extensions: 410856
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)