Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O11
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.55 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   2.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 446 SPSRPAGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALS 306
           SPS P G +++   +  ++ F SV  +   + N  G+  +F  D L+
Sbjct: 80  SPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSENYTGISDLFVFDDLN 126


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +2

Query: 452 FHSYPGSDPEPFPVYYV-GVCTGW-GATGS--WKIE 547
           F  YPG  P+P P Y   G C+ +   +GS  W++E
Sbjct: 37  FLQYPGCVPKPIPSYACRGRCSSYLQVSGSKIWQME 72


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 361 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 269
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 361 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 269
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 361 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 269
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -3

Query: 361 LSISTLSGLVLFFLMTLLAFPQPPIITSYIGS---DSCGPVVSAMWASFAALTLN*TDPL 191
           LSIS L  L +FFL+     P   +    +G     +   V  ++  + A L +N   P+
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPV 329

Query: 190 ETREELVLKVVIL 152
             R    ++VV +
Sbjct: 330 THRMARWVRVVFI 342


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 632  GVRFLRSLPGXAQG 591
            G+RFLR+ PG + G
Sbjct: 1031 GLRFLRAKPGKSSG 1044


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 465 LGLIRNLSQFTTSESAQAGVPQAPGKSKCHRL 560
           L  +RN     T  SA  G+P      + HRL
Sbjct: 420 LEALRNHDMSLTKASATFGIPSTTLWQRAHRL 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,046
Number of Sequences: 438
Number of extensions: 6264
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)