Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O05
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   3.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.8  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   4.8  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   8.4  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 455  VDESSKFMFVLALGVLLYGKLFPQVRQFSLESLY-HCTDQMTLFRVAFGAFSSKRLGDSF 279
            V ESS+ +  L    L     FP  R+  + +L  HC D   +  V F   S K L D F
Sbjct: 906  VSESSEALISLVFNNLQTINRFPGHRERYVSTLISHCGDLFAINHVCFVRNSLKYLLDDF 965

Query: 278  LK 273
             K
Sbjct: 966  TK 967


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +3

Query: 324  PKQRHLIRTVVKAFQTKLPDLWEELAIKED 413
            P    LI++ ++ +Q +LP++W+++ +  D
Sbjct: 2797 PTNVQLIKSALQVWQERLPNVWDDINLWRD 2826


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 233 STWHSSSRGASCPPAARRQNYHIDCCSILPVGKQRPILTRIKSRSSSCLLSTCVLYS 63
           STW  ++     P   RR NY+I     LP    R I+  + +  S+  LS  +  S
Sbjct: 41  STWKRANIPQQKPSLVRRINYYIPVLHWLPNYSLRNIIWDVLAGCSTACLSVPIALS 97


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -2

Query: 533 IQSIMAIFHSELCYLVSCRHSSLVHGVDESSKFMFVLALGVLLYGKLFPQVRQFSLESLY 354
           ++ I A  H  L    SC +  + +   E +KF + +   + +  K F + R  +L++L 
Sbjct: 15  VEEIEAEIHKNLHISKSCSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRA-ALDTLR 73

Query: 353 HCTDQMT--LFRVAFGAFSS 300
            C  +++     VAFG+  S
Sbjct: 74  LCLKRISPDAELVAFGSLES 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,586
Number of Sequences: 5004
Number of extensions: 52294
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)