Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O05
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-16|CAD31817.1|  319|Caenorhabditis elegans Hypothetical...    31   1.1  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AL132948-16|CAD31817.1|  319|Caenorhabditis elegans Hypothetical
           protein Y39B6A.19 protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -2

Query: 542 KEPIQSIMAIFHSELCYLVSCRHSSLVH-GVDESSKFMFVLALGVLLYGKLFPQVRQFSL 366
           +EP   +  + +  L +L +  H  L+H GV  +S  +FV A+   ++  +  +     L
Sbjct: 163 REPSHKLRGLLNQRLGHLFTVNHIQLIHVGVVFASLLLFVFAIPAWVFSSI--ETDWSYL 220

Query: 365 ESLYHCTDQMT 333
           ++ Y+C   +T
Sbjct: 221 DAFYYCFVSLT 231


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 197 PPAARRQNYHIDCCSILPVGKQRPILTRIKSRSSSCLLSTCVLYSKLNV 51
           PPA     Y +   S+L +GKQR +     +    C++ST V  + L +
Sbjct: 568 PPADCEPLYCLPLYSLLSMGKQRRVFDETPAGMRLCVISTNVAETSLTI 616


>AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical
           protein K10C9.3 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 318 CNPKQRHLIRTVVKAFQTKLPDLWEELAIKEDPKGQYKHEF 440
           C    RH    ++K+ + +L  +W  L  K+  +  +KHE+
Sbjct: 75  CRGTPRHFDENLIKSIEDRLVVVWPNLYPKKTIQSFWKHEY 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,523
Number of Sequences: 27780
Number of extensions: 302820
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)