Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O04
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   2.7  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   6.3  

>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 300 FEPLRFVFVLDVSRLLSCSTQTYPVPHEIFFEAMFPQLMH 181
           +  +R   ++ ++RL+S  T   P+   +F E +FP L H
Sbjct: 484 YADVRISALITITRLVSNVTSIAPINAFLFQEYLFPDLQH 523


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 257 CSRARPRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQRTTKAKII*LLHFDSYS 87
           CS      T+FL RFSS       CT    +  LA+  T  T         +F++YS
Sbjct: 184 CSALIVLPTKFLARFSSFNVVFQICTILIFIISLAASSTSETRNTGSYIFGNFENYS 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,706
Number of Sequences: 5004
Number of extensions: 52842
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)