Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O03
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...   155   6e-39
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...   137   2e-33
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    80   3e-16
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    79   8e-16
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    75   1e-14
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    44   4e-05
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    28   2.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.0  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score =  155 bits (377), Expect = 6e-39
 Identities = 75/166 (45%), Positives = 99/166 (59%)
 Frame = +2

Query: 257 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 436
           GLFINN+ V S  G   K  +P+  ++I EV                  F+  +PWR   
Sbjct: 24  GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFS 83

Query: 437 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADXIH 616
           +++RG  +++LAD IE++  YLAS+ETLDNGK    +  GD+ A+    RYY GWAD  +
Sbjct: 84  SAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLAR-GDVQAAADCFRYYGGWADKDY 142

Query: 617 GNVLPADGKYFAYTRHEPVGVCGQIIPWXFPILMAAWKLGPXLXDG 754
           G  +  D K FAYTRHEP+GVCGQIIPW FP LM AWK+ P +  G
Sbjct: 143 GQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACG 188


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score =  137 bits (332), Expect = 2e-33
 Identities = 68/166 (40%), Positives = 99/166 (59%)
 Frame = +2

Query: 257 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 436
           GL+IN EW KS++  T++T +P+  +VIA+V                  FK    W+ + 
Sbjct: 22  GLYINGEWHKSAE--TWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT---WKKVP 76

Query: 437 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADXIH 616
            SE+G L+ KLA+L E+    LA++E +D+GKP   +  GD+  +I  LRY AGWAD I+
Sbjct: 77  GSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIY 136

Query: 617 GNVLPADGKYFAYTRHEPVGVCGQIIPWXFPILMAAWKLGPXLXDG 754
           G V+P   +  AY +  P+GVCGQI+PW +P+ MA WK+ P L  G
Sbjct: 137 GQVIPTGPEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAG 182


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 2/166 (1%)
 Frame = +2

Query: 263 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 442
           F+  +W+ S + KTF+ +NPA G++I +V                  FK    ++     
Sbjct: 21  FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFK---TYKNFTHV 77

Query: 443 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADXIHGN 622
           +R  L+ + A+LI  ++  L  + TL+NGKP   +   ++      L++YA  A    G+
Sbjct: 78  QRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEM-EVTTCSGYLKWYAAEAVRTFGD 136

Query: 623 VLPA--DGKYFAYTRHEPVGVCGQIIPWXFPILMAAWKLGPXLXDG 754
           V P+    + F  +  +PVGV   I PW FP  M A K G  L  G
Sbjct: 137 VAPSSLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAG 182


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 1/165 (0%)
 Frame = +2

Query: 263 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 442
           +I  +WV ++ GKTF  ENP   + +A V                  F     +R  D  
Sbjct: 27  YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFL---SYRNSDIK 83

Query: 443 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADXIHG- 619
           ER A++ +  DLI  +   LA++ TL+NGK   D+  G++  + K + ++AG A  I G 
Sbjct: 84  ERYAILRRWYDLIMENADDLATMMTLENGKALGDAK-GEVVYAAKFIDWFAGEALRISGD 142

Query: 620 NVLPADGKYFAYTRHEPVGVCGQIIPWXFPILMAAWKLGPXLXDG 754
           + + ++ +    T  +PVGV G I PW FP  M   K+G  L  G
Sbjct: 143 SSMSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAG 187


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 5/170 (2%)
 Frame = +2

Query: 260 LFINNEWVKSSD--GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTM 433
           LFI+ ++V   +   K     NPA  ++I    +                F+ G  W   
Sbjct: 23  LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI-WAKW 81

Query: 434 DASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADXI 613
              +RG ++ K+A ++   R  LA ++T++ GKP   + F D+ +      YYA  A+  
Sbjct: 82  PGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALF-DIDSCADMFEYYAEVAETD 140

Query: 614 HGNV---LPADGKYFAYTRHEPVGVCGQIIPWXFPILMAAWKLGPXLXDG 754
           +  V   LP +  + A+ +  P GV G I PW FP+ MA WKL P +  G
Sbjct: 141 NPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASG 190


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
 Frame = +2

Query: 422 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRY-YAG 598
           W++   +ER   +  L + I R++   A +   D GK   D+ FG++  +++ + +  A 
Sbjct: 41  WKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLAN 100

Query: 599 WADXIHGNVLP---ADGKYFAYTRHEPVGVCGQIIPWXFPILMAAWKLGPXLXDGLYCGH 769
               +     P          Y ++EP+GV   ++ W +P+  A   LGP +   L+ G+
Sbjct: 101 GEQSLRPTKRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPLHNA---LGP-IISALFAGN 156


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 625 SARRRKILCLHSSRASGCVRSDNTMEXPYIDGG 723
           + RR+K+ C H    S C++        YID G
Sbjct: 25  ACRRKKLKCDHGRPCSNCLKRSTIQSCIYIDPG 57


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 227 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFI 81
           +P    + L+ ++ +   +C R AT  +Y Y P +    +S+SYR   I
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,075
Number of Sequences: 5004
Number of extensions: 62885
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)