Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_O01
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   3.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.8  

>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 817 RCRHPPSGVGRXXPXWAXXXKPPVSXR 897
           RC  PP+   R  P  A   +PP++ R
Sbjct: 149 RCIGPPTPFPRFIPPNAYRFRPPLNPR 175


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -3

Query: 649 DFCDARSGGRSLWKNASNAAFLRFLAFCW 563
           D C   SGG  LW+N      +      W
Sbjct: 343 DACQMDSGGPVLWQNPRTKRLVNIGIISW 371


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +2

Query: 665 GGXPPTGL*RYQAFPPESSLXRSPVPTLPXTRIPVRLSPLRE 790
           G  PP    ++Q           PVPT+    +    +PL+E
Sbjct: 161 GDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTPLKE 202


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 693 DTRRFPLKAPSCALLFRPCR 752
           + R FP+   SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,526
Number of Sequences: 438
Number of extensions: 3303
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)