Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N23
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    28   1.6  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   6.5  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   6.5  

>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -1

Query: 237 PSDKVVNIARVSD*P*KLAGDRILLCVTRRHRNLSVHAXQGVQRDN 100
           P+DKVV +   +  P K A   +L C  R+ R+LSV   + ++RD+
Sbjct: 70  PADKVVEVVEKALGPHKSA---LLHCAIRQSRSLSVGNTRSLKRDS 112


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -3

Query: 568 NSLETTPPADK*VXLPRSHTPEADASIPALPPICLXQVNSSP 443
           ++LE+TP A +   +  ++  E  +S+PA+  I + + N++P
Sbjct: 391 SNLESTPAAQQTSEVEANNHQEKPSSLPAVEQINVNEENNTP 432


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 256 GKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGXGGDSTSYG 411
           GK  G   + D  +          F   RG     +Y TRV G GG  T YG
Sbjct: 166 GKFIGVGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,418
Number of Sequences: 5004
Number of extensions: 48307
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)