Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N22
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    28   2.3  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   3.0  

>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 224 PIGLSFKGGILVLTGNANXHHLAEGQDSPNQDNQQLGFIFEYFGETSFXE 75
           P GL  KGG      +   HHLA+  D  N+D+   G +    G T   E
Sbjct: 143 PKGLYPKGGCCKFCSSV--HHLAKDCDQVNKDDVSFGHVVGVAGTTGADE 190


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 483 FDKFGVKDLEYLKNTXQAFRXFP 415
           FD+FGV D EY K   +  R FP
Sbjct: 308 FDQFGVYDKEYEKKIEKTKRNFP 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,460
Number of Sequences: 5004
Number of extensions: 32315
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)