Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N21
         (865 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39 pro...    37   0.11 
D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39 pro...    37   0.11 
BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39 p...    37   0.11 
BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39 p...    37   0.11 
AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39 p...    37   0.11 
AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39 v...    36   0.25 
L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39 pro...    34   0.58 
BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-l...    34   0.58 
AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2...    34   0.58 
AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-l...    34   0.58 

>U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 22/40 (55%), Positives = 24/40 (60%)
 Frame = +1

Query: 133 LGKKS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKL 252
           L KK  KQNR     W +     N IRYN+KRRHWR TKL
Sbjct: 13  LAKKQ-KQNRPIP-QWIR-MKTGNKIRYNSKRRHWRRTKL 49


>D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 22/40 (55%), Positives = 24/40 (60%)
 Frame = +1

Query: 133 LGKKS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKL 252
           L KK  KQNR     W +     N IRYN+KRRHWR TKL
Sbjct: 13  LAKKQ-KQNRPIP-QWIR-MKTGNKIRYNSKRRHWRRTKL 49


>BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 22/40 (55%), Positives = 24/40 (60%)
 Frame = +1

Query: 133 LGKKS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKL 252
           L KK  KQNR     W +     N IRYN+KRRHWR TKL
Sbjct: 13  LAKKQ-KQNRPIP-QWIR-MKTGNKIRYNSKRRHWRRTKL 49


>BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 22/40 (55%), Positives = 24/40 (60%)
 Frame = +1

Query: 133 LGKKS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKL 252
           L KK  KQNR     W +     N IRYN+KRRHWR TKL
Sbjct: 13  LAKKQ-KQNRPIP-QWIR-MKTGNKIRYNSKRRHWRRTKL 49


>AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 22/40 (55%), Positives = 24/40 (60%)
 Frame = +1

Query: 133 LGKKS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKL 252
           L KK  KQNR     W +     N IRYN+KRRHWR TKL
Sbjct: 13  LAKKQ-KQNRPIP-QWIR-MKTGNKIRYNSKRRHWRRTKL 49


>AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39
           variant protein.
          Length = 70

 Score = 35.5 bits (78), Expect = 0.25
 Identities = 21/40 (52%), Positives = 24/40 (60%)
 Frame = +1

Query: 133 LGKKS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKL 252
           L KK  KQNR     W +     N IRYN+KRRHW+ TKL
Sbjct: 32  LAKKQ-KQNRPIP-QWIR-MKTGNKIRYNSKRRHWKRTKL 68


>L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 34.3 bits (75), Expect = 0.58
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 208 IRYNAKRRHWRXTKL 252
           IRYN+KRRHWR TKL
Sbjct: 35  IRYNSKRRHWRRTKL 49


>BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 34.3 bits (75), Expect = 0.58
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 208 IRYNAKRRHWRXTKL 252
           IRYN+KRRHWR TKL
Sbjct: 35  IRYNSKRRHWRRTKL 49


>AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2
           protein.
          Length = 51

 Score = 34.3 bits (75), Expect = 0.58
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 208 IRYNAKRRHWRXTKL 252
           IRYN+KRRHWR TKL
Sbjct: 35  IRYNSKRRHWRRTKL 49


>AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 34.3 bits (75), Expect = 0.58
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 208 IRYNAKRRHWRXTKL 252
           IRYN+KRRHWR TKL
Sbjct: 35  IRYNSKRRHWRRTKL 49


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,794,986
Number of Sequences: 237096
Number of extensions: 1613720
Number of successful extensions: 1982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)