Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N21
         (865 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF012422-1|AAB65802.1|   51|Drosophila melanogaster ribosomal pr...    45   2e-04
AY071712-1|AAL49334.1|   51|Drosophila melanogaster RH27094p pro...    43   6e-04
AE013599-3798|AAF47154.1|   51|Drosophila melanogaster CG3997-PA...    43   6e-04

>AF012422-1|AAB65802.1|   51|Drosophila melanogaster ribosomal
           protein 46 protein.
          Length = 51

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 24/38 (63%), Positives = 26/38 (68%)
 Frame = +1

Query: 142 KS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKLK 255
           K  KQNR+    W +  A  NTIRYNAKRRHWR TKLK
Sbjct: 15  KKLKQNRSVP-QWVR-LATGNTIRYNAKRRHWRRTKLK 50


>AY071712-1|AAL49334.1|   51|Drosophila melanogaster RH27094p
           protein.
          Length = 51

 Score = 42.7 bits (96), Expect = 6e-04
 Identities = 23/38 (60%), Positives = 25/38 (65%)
 Frame = +1

Query: 142 KS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKLK 255
           K  KQNR+    W +     NTIRYNAKRRHWR TKLK
Sbjct: 15  KKLKQNRSVP-QWVR-LRTGNTIRYNAKRRHWRRTKLK 50


>AE013599-3798|AAF47154.1|   51|Drosophila melanogaster CG3997-PA
           protein.
          Length = 51

 Score = 42.7 bits (96), Expect = 6e-04
 Identities = 23/38 (60%), Positives = 25/38 (65%)
 Frame = +1

Query: 142 KS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKLK 255
           K  KQNR+    W +     NTIRYNAKRRHWR TKLK
Sbjct: 15  KKLKQNRSVP-QWVR-LRTGNTIRYNAKRRHWRRTKLK 50


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,213,866
Number of Sequences: 53049
Number of extensions: 422485
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4168047156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)