Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N21
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    41   0.001
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    41   0.001
U80451-9|AAB37843.1|  285|Caenorhabditis elegans Collagen protei...    28   9.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   9.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   9.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   9.9  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/41 (56%), Positives = 26/41 (63%)
 Frame = +1

Query: 133 LGKKS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKLK 255
           L KK  KQNR     W +     NT++YNAKRRHWR TKLK
Sbjct: 13  LAKKQ-KQNRPMP-QWVR-MKTGNTMKYNAKRRHWRRTKLK 50


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/41 (56%), Positives = 26/41 (63%)
 Frame = +1

Query: 133 LGKKS*KQNRTHXLSWGKGCAQENTIRYNAKRRHWRXTKLK 255
           L KK  KQNR     W +     NT++YNAKRRHWR TKLK
Sbjct: 13  LAKKQ-KQNRPMP-QWVR-MKTGNTMKYNAKRRHWRRTKLK 50


>U80451-9|AAB37843.1|  285|Caenorhabditis elegans Collagen protein
           73 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = +2

Query: 488 GKXGAPXLXGPQKPXKXXXPPXXXFFXXXPXGXXGGFXXXXXXPXPG 628
           G+ GAP   GP  P +   P    F    P G  G          PG
Sbjct: 113 GRPGAPGAPGPDAPNEHVQPTPADFCFECPPGPAGNAGNPGPKGPPG 159


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -1

Query: 859 GGXXXXPPPXGAFXXXXGPXXGXLGKNFFXGXIPXXLGXXXXPPXXGGXKXPPPXXKXG 683
           GG    PPP G      GP           G  P   G    PP  GG   PPP    G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPP----GGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -1

Query: 859 GGXXXXPPPXGAFXXXXGPXXGXLGKNFFXGXIPXXLGXXXXPPXXGGXKXPPPXXKXG 683
           GG    PPP G      GP           G  P   G    PP  GG   PPP    G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPP----GGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -1

Query: 859 GGXXXXPPPXGAFXXXXGPXXGXLGKNFFXGXIPXXLGXXXXPPXXGGXKXPPPXXKXG 683
           GG    PPP G      GP           G  P   G    PP  GG   PPP    G
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPP----GGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,604
Number of Sequences: 27780
Number of extensions: 207542
Number of successful extensions: 284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)