Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N17
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   6.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   6.3  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   6.3  

>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 447 TVTQGTCGFCTLEGNCLFXTLPPFNPKPIYIDMGXRYRRHASD 575
           T T   C  CTL G C+   L    P   ++D+  +   HAS+
Sbjct: 103 TPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASE 145


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 209 YRALCWRWPEGRLDEPLARSLSKEQHPRTELEYLKTLYH 93
           YR + +   E ++D       S  ++ +  L+Y+K LYH
Sbjct: 645 YRQISYAMTEEQIDSSTELRQSMTRNVQNYLDYIKNLYH 683


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 395 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGA 276
           S + SLFS       R   RF        F G++GW  +LG+
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 359 VSPIQKITRRPLNIHIIQLI--LGLDQPIESHRNT 457
           + P+ + T  PLN H++Q I   G  QP    +N+
Sbjct: 165 IEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNS 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,720
Number of Sequences: 5004
Number of extensions: 74040
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)