Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N17
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical...    29   3.4  
AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical...    29   3.4  
U49941-3|AAP46281.1|  451|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform...    29   5.9  
Z82260-10|CAB05138.1|  361|Caenorhabditis elegans Hypothetical p...    28   7.8  
U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain (pr...    28   7.8  

>AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17b protein.
          Length = 497

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
 Frame = -1

Query: 494 AVSLEGTKTAGPLCYGGSRSAGQVPVSTV*CECSMDASLF-----SGLVTLRTYLRFGSS 330
           A SL G   + PL +GGS +             S  ASLF     S   T    L FGSS
Sbjct: 281 ASSLFGASPSKPLVFGGSSADSTTSAPKPFSALSTAASLFGSSSASTTTTATQPLSFGSS 340

Query: 329 CT--SSIFEGRIG 297
            T  SS+F G  G
Sbjct: 341 STGGSSLFSGFAG 353


>AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17a protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
 Frame = -1

Query: 494 AVSLEGTKTAGPLCYGGSRSAGQVPVSTV*CECSMDASLF-----SGLVTLRTYLRFGSS 330
           A SL G   + PL +GGS +             S  ASLF     S   T    L FGSS
Sbjct: 296 ASSLFGASPSKPLVFGGSSADSTTSAPKPFSALSTAASLFGSSSASTTTTATQPLSFGSS 355

Query: 329 CT--SSIFEGRIG 297
            T  SS+F G  G
Sbjct: 356 STGGSSLFSGFAG 368


>U49941-3|AAP46281.1|  451|Caenorhabditis elegans Hypothetical
           protein K10B3.6b protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 566 MSSVTXSHINIYWLGVKRRKRXEQAVSLEGTKT 468
           +SS    HIN+ ++ VKR K  +Q + ++  KT
Sbjct: 367 LSSAPVGHINVNYMIVKRNKYTDQNLDIDSMKT 399


>U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical
           protein K10B3.6a protein.
          Length = 757

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 566 MSSVTXSHINIYWLGVKRRKRXEQAVSLEGTKT 468
           +SS    HIN+ ++ VKR K  +Q + ++  KT
Sbjct: 367 LSSAPVGHINVNYMIVKRNKYTDQNLDIDSMKT 399


>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
            protein.
          Length = 1133

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -3

Query: 372  WIGDTANIPSVWIELHVVDFRRKNRMVCS-TWRTEEHCHLDTAIAVPGQLVALYVLSGAV 196
            W+G +A   S+ + L + + R  + +V + + R  +HC+  T + + GQ+++   +    
Sbjct: 770  WVGTSAGA-SLALNLILPEDRFTSTIVVAPSVRGRKHCYYGTVVRLKGQVISQSFMDNTF 828

Query: 195  LAVA*RSAG*TSGTKPEQRTAP 130
              ++  S       K +  T+P
Sbjct: 829  CIISPASESYKEAAKEQSATSP 850


>Z82260-10|CAB05138.1|  361|Caenorhabditis elegans Hypothetical
           protein C32H11.12 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = +1

Query: 229 LARNRYGCIKVTMFLGAPSTADHPIL-PSKID----DVQLDPNRRYVRSVTNPENNEASI 393
           LA N Y C+  T+ + APS    P+  P   D      Q+  N++ V ++  P    A++
Sbjct: 14  LAVNCYECMNNTVVINAPSDISKPVFYPDGWDGQSSTPQISENQQCVMTINVPTGYYATV 73

Query: 394 EHSHHTVDTG 423
               H  + G
Sbjct: 74  TFYKHFTEPG 83


>U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 11 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 420 WDLTSRSRATVTQGTCGFCTLEGNCL---FXTLPPFNPKPIYIDMGXRYRRHASDDPEEL 590
           +  T+RSRA    G C    L  + L     TLP +   P+   +  + R+ +S++P EL
Sbjct: 11  YGFTARSRAFEPAGICYETRLIRDKLTLGHCTLPIYKNSPVAKPVTEQQRKKSSEEPAEL 70

Query: 591 R 593
           R
Sbjct: 71  R 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,483,203
Number of Sequences: 27780
Number of extensions: 416100
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)