Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N17
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   6.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 176 RLDEPLARSLSKEQHPRTELEYLKT 102
           R +EP+    SKE+HP   L+   T
Sbjct: 167 RANEPVVLDDSKEEHPTCALDLTPT 191


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 816 IIMVKNTYEYLHYLN*NGHFKIHCIFXQNY*N 721
           I  + N Y+Y +Y N N ++  +  +  NY N
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNN 346


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 552 RYRRHASDDPEELRXYNEXFLIPXGYXXXXGKVPENKR 665
           + +RH + D  ++R   E   +P G       VP+  R
Sbjct: 24  KLKRHLAQDKVKVRVAEEVDPLPFGVENTISSVPQPPR 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,525
Number of Sequences: 438
Number of extensions: 5464
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)