Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N15
         (1030 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    35   0.021
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    32   0.15 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   5.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   6.3  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   9.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   9.9  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 34.7 bits (76), Expect = 0.021
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +3

Query: 282 LRGIQPAXPAERXRLGYRKKTVKRVYGGVL 371
           L+GI    P E  RL + KKTV+R YGG L
Sbjct: 51  LQGIPALRPREFARLSHNKKTVQRAYGGCL 80



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 385 VKQRMVRAFLIEXQKIVK 438
           VK R+VRAFLIE QKIVK
Sbjct: 85  VKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 385 VKQRMVRAFLIEXQKIVK 438
           VK R+VRAFLIE QKIVK
Sbjct: 85  VKDRIVRAFLIEEQKIVK 102


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 407 ALTMRCLTHLWAEDTTIDTFHCF 339
           AL+  C THL  E   + + HCF
Sbjct: 5   ALSKSCKTHLLDEGLDVSSIHCF 27


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect(2) = 6.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 557 FFXFFFFXXNF*GFYLNLSPKIHFVAFF 474
           FF FFF+   F  F+  L   +HF  FF
Sbjct: 107 FFCFFFYFSLF-SFFSFLFTSLHFNFFF 133



 Score = 20.6 bits (41), Expect(2) = 6.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 560 FFFXFFFF 537
           FFF FFFF
Sbjct: 78  FFFFFFFF 85


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -3

Query: 449 ALRTFTIFCXSIKKALTMRCL-THLWAEDTTIDTFHCFLTVAKTGTFSRXSWLDTTEFAS 273
           A  T T+   S+ K L    L   L A D TI         A+ G FS+ SW  T    S
Sbjct: 77  AATTNTVSTVSVSKVLPALLLGVVLAALDNTIVASTYTKIGAEFGKFSQVSWTATAYMIS 136

Query: 272 C 270
           C
Sbjct: 137 C 137


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 151 TSSFAPGNVKPGCHPIFQGFLNQAW*T 71
           T+SF P   +   HPI  GF N  + T
Sbjct: 154 TTSFVPTTTESSIHPITTGFYNTTFTT 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,413
Number of Sequences: 5004
Number of extensions: 43845
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)