Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_N15
(1030 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34 pro... 37 0.10
CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein. 33 1.7
CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein. 33 1.7
BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34 p... 33 1.7
BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34 p... 33 1.7
BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34 p... 33 1.7
AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34 p... 33 1.7
>L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 37.1 bits (82), Expect = 0.10
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 279 KLRGIQPAXPAERXRLGYRKKTVKRVYGGVLC 374
KLRG++P P RL KK V R YGG +C
Sbjct: 52 KLRGVRPVRPKVLMRLSKTKKHVSRAYGGSMC 83
Score = 33.1 bits (72), Expect = 1.7
Identities = 18/27 (66%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 367 SSAHKCVKQRMVRAFLIEXQK-IVKVL 444
S KCV+ R+ RAFLIE QK IVKVL
Sbjct: 81 SMCAKCVRDRIKRAFLIEEQKIIVKVL 107
>CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 33.1 bits (72), Expect = 1.7
Identities = 18/27 (66%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 367 SSAHKCVKQRMVRAFLIEXQKI-VKVL 444
S KCV+ R+ RAFLIE QKI VKVL
Sbjct: 81 SMCAKCVRDRIKRAFLIEEQKIVVKVL 107
Score = 32.7 bits (71), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 279 KLRGIQPAXPAERXRLGYRKKTVKRVYGGVLC 374
+LRG++ P RL KK V R YGG +C
Sbjct: 52 RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83
>CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 33.1 bits (72), Expect = 1.7
Identities = 18/27 (66%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 367 SSAHKCVKQRMVRAFLIEXQKI-VKVL 444
S KCV+ R+ RAFLIE QKI VKVL
Sbjct: 81 SMCAKCVRDRIKRAFLIEEQKIVVKVL 107
Score = 32.7 bits (71), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 279 KLRGIQPAXPAERXRLGYRKKTVKRVYGGVLC 374
+LRG++ P RL KK V R YGG +C
Sbjct: 52 RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83
>BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 33.1 bits (72), Expect = 1.7
Identities = 18/27 (66%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 367 SSAHKCVKQRMVRAFLIEXQKI-VKVL 444
S KCV+ R+ RAFLIE QKI VKVL
Sbjct: 81 SMCAKCVRDRIKRAFLIEEQKIVVKVL 107
Score = 32.7 bits (71), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 279 KLRGIQPAXPAERXRLGYRKKTVKRVYGGVLC 374
+LRG++ P RL KK V R YGG +C
Sbjct: 52 RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83
>BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 33.1 bits (72), Expect = 1.7
Identities = 18/27 (66%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 367 SSAHKCVKQRMVRAFLIEXQKI-VKVL 444
S KCV+ R+ RAFLIE QKI VKVL
Sbjct: 81 SMCAKCVRDRIKRAFLIEEQKIVVKVL 107
Score = 32.7 bits (71), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 279 KLRGIQPAXPAERXRLGYRKKTVKRVYGGVLC 374
+LRG++ P RL KK V R YGG +C
Sbjct: 52 RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83
>BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 33.1 bits (72), Expect = 1.7
Identities = 18/27 (66%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 367 SSAHKCVKQRMVRAFLIEXQKI-VKVL 444
S KCV+ R+ RAFLIE QKI VKVL
Sbjct: 81 SMCAKCVRDRIKRAFLIEEQKIVVKVL 107
Score = 32.7 bits (71), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 279 KLRGIQPAXPAERXRLGYRKKTVKRVYGGVLC 374
+LRG++ P RL KK V R YGG +C
Sbjct: 52 RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83
>AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 33.1 bits (72), Expect = 1.7
Identities = 18/27 (66%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 367 SSAHKCVKQRMVRAFLIEXQKI-VKVL 444
S KCV+ R+ RAFLIE QKI VKVL
Sbjct: 81 SMCAKCVRDRIKRAFLIEEQKIVVKVL 107
Score = 32.7 bits (71), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 279 KLRGIQPAXPAERXRLGYRKKTVKRVYGGVLC 374
+LRG++ P RL KK V R YGG +C
Sbjct: 52 RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,695,634
Number of Sequences: 237096
Number of extensions: 1829525
Number of successful extensions: 2739
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2739
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13876114826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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