Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N14
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   6.3  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   8.3  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +2

Query: 350  LTRMSSFHERQKNLFNLLKDAEEQYSFSKSNKVT--------TTQDYGTIDRKSYRKLKH 505
            L R    +E+ K+L  L ++A  +Y  + SN +           +DYG++++K+Y +  +
Sbjct: 921  LARKKECNEKIKSLGVLPEEAFIKYVSTSSNAIVKKLHKINEALKDYGSVNKKAYEQFNN 980

Query: 506  EMKQ 517
              KQ
Sbjct: 981  FTKQ 984


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 353  TRMSSFHERQKNLFNLLKDAEEQYSFSKSNKVTTTQD 463
            +R+   HER  +L N +  A+E+Y F  + K +  +D
Sbjct: 895  SRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEED 931


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 347 KLTRMSSFHERQKNLFNLLKDAEEQYSFSK 436
           ++ R  ++H R++  F+L+K AEE+    K
Sbjct: 129 RIFRSQNWHARRQKQFHLMKPAEERKQLPK 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,263
Number of Sequences: 5004
Number of extensions: 50394
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)