Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N14
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    27   0.31 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    26   0.53 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.71 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   5.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   5.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   5.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   8.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   8.7  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 685 ALAFIKELEEKHEDHRTEQEKLDDDIFXKPRLIFI 789
           A++F+  ++EK ++H  E    + DIF     IF+
Sbjct: 186 AISFVFGMKEKRKEHHLEGPSYNSDIFAMIGTIFL 220


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 444 KSQQPKIMAQLTEKVTENSSMK*SNSEVNKVYSN 545
           +S++PKI++ L+ K   N++   +N+  N  Y+N
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNN 108


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 685 ALAFIKELEEKHEDHRTEQEKLD-DDIFXKPRLIFILQXKTL*GKEG-HX*XG*SNHA 852
           A  FIK LEE+   H   +E+L  +  F + RL  +     L G  G H   G S+ A
Sbjct: 93  AKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGLSSSA 150


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 710 KKNMKIIEQNKKNLMMI 760
           ++NM ++ QN+K L MI
Sbjct: 339 RQNMDMVAQNEKTLQMI 355


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 548 PEANIRECLGTKAVPDHVKNPEKWKYYSLSGC 643
           PE ++ E LG   V  +    +K K  +++GC
Sbjct: 578 PEVDVEEILGEAKVLQNFDIKDKNKKVNVAGC 609


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 683 LHWHL*KNWKKNMKIIEQNKKNLM 754
           L ++L K WKKN+ + +   K L+
Sbjct: 86  LEFYLGKEWKKNLNLRDSVTKYLI 109


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 444 KSQQPKIMAQLTEKVTENSS 503
           +S++PKI++ L+ K   N++
Sbjct: 75  RSREPKIISSLSNKTIHNNN 94


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 653 SXCNIPRVNNISISQDFLHDLVQ 585
           S CN P  N  SIS  + +  V+
Sbjct: 162 SCCNSPENNTCSISNSYTNGCVE 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,267
Number of Sequences: 438
Number of extensions: 3539
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)