Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N13
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.021
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.20 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 611 PPPPPXXXXXXXPXPPPXPPP 673
           PPPPP       P PPP PPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 611 PPPPPXXXXXXXPXPPPXPPP 673
           PPPPP         PPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 611 PPPPPXXXXXXXPXPPPXPPP 673
           PPPPP         PPP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 613 PPPPPXXXXXXXXXPXPPPPXXXS 684
           PPPPP         P PPPP   S
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVS 786



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 611 PPPPPXXXXXXXPXPPPXPPP 673
           PPPPP       P P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP 752



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 611 PPPPPXXXXXXXPXPPPXPPP 673
           PPPP        P P P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPP 754


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 611 PPPPPXXXXXXXPXPPPXPPP 673
           PPPPP       P  PP PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 611 PPPPPXXXXXXXPXPPPXPPP 673
           PPPPP         PPP PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 617 PPPXXXXXXXPXPPPXPPP 673
           PP        P PPP PPP
Sbjct: 241 PPERVPSLSAPAPPPIPPP 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,853
Number of Sequences: 5004
Number of extensions: 12687
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)