Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N09
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    89   8e-19
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    89   8e-19
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   6.2  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +2

Query: 152 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQ 325
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQ
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQ 74



 Score = 34.7 bits (76), Expect = 0.018
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 348 DNYVPEVSALEHDIIEVDPDTXGYVEDAGLQQ 443
           D YVPEVS LE D + VD DT   ++  G  Q
Sbjct: 82  DQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQ 113


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +2

Query: 152 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQ 325
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQ
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQ 74



 Score = 33.5 bits (73), Expect = 0.041
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 348 DNYVPEVSALEHDIIEVDPDTXGYVEDAG 434
           D YVPEVS LE D I VD DT   ++  G
Sbjct: 82  DQYVPEVSELEKDKINVDQDTKDMLKALG 110


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 240 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 130
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 509 INYACHHSHPWVAGCVSCRPLILLKSSIFNISXGVGVYF 393
           IN   HH  PW   CV  R        +F +S  + +YF
Sbjct: 423 INRYDHHC-PWTGNCVGARNHRTFLLFVFTLSTLIPIYF 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,760
Number of Sequences: 5004
Number of extensions: 29769
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)