Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N04
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    33   0.051
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    30   0.36 
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.47 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    29   0.63 
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    29   0.63 
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   2.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   3.3  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   4.4  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    26   5.8  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   7.7  

>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 287 ARAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRK-AHPDVE 463
           AR + D S S   +L A AK    A  DA   A E   +++ +IER+A    K A  + E
Sbjct: 129 ARQYNDRSTSEALELEARAKK---AAQDAE-LASERAREAQSSIERSASLREKQAREEAE 184

Query: 464 KNATALRE 487
           + ATALRE
Sbjct: 185 RAATALRE 192


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 230 DFXNNSLTRSPSQRTHRTSARAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQS 406
           D+  N  T      T    A A+ +   SVLQ+L+   + +QG LG   N     AL Q 
Sbjct: 63  DYVANLWTNLHGGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQD 122

Query: 407 R-QNIERTAE 433
           + QN++   E
Sbjct: 123 KGQNLQHLQE 132


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 299 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 436
           KDG+++   +LN FAK L  +    + +A +   +    IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = -3

Query: 385 GLAVRVSERSLETLGEGVELLQHGLGAVLPSPC*SPVR------PLTW 260
           GL+ R+S+ SL ++        +  G VLP+P  +PVR      PLTW
Sbjct: 59  GLSSRLSKPSLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNKPPLTW 106


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 290 RAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD---V 460
           R  ++  + +L   N + + L   + +A  KA+++LEQ+    +   E L K H +    
Sbjct: 29  RFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAIT 87

Query: 461 EKNATALREKLQAAVQ 508
           E+   + +EKL A ++
Sbjct: 88  EQEIFSFQEKLDAMLK 103


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 410 ASTVPKPPWPCRSRLRALPG 351
           AST+ K PWP  + L  +PG
Sbjct: 38  ASTLEKEPWPASTALLVMPG 57


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = +2

Query: 221 VP*DFXNNSLTR-SPSQRTHRTSARAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEAL 397
           +P  + +N L+  +   R+     +     S  +   + A  K L GA      KAKE  
Sbjct: 113 IPISYRDNLLSHVNGYARSMHNDRKVRASRSRRISGMILAHFKRLSGA---DEKKAKEED 169

Query: 398 EQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVAG 523
           ++ R   +RTA E+RK    +E+     R + +AA    VAG
Sbjct: 170 KRIRLLAKRTAWEIRKKWKVIEREVRRRRAE-RAAEAQRVAG 210


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +2

Query: 347 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 502
           S++  L + N + KE +E     +      RT +E        EKN   LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 395 LEQSRQNIERTAEELRKAHPDVEK 466
           +EQ+R   E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 543 KVSSNVQET--NEKLAPKIKAAYD 608
           +V  N++ET   EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,257
Number of Sequences: 5004
Number of extensions: 32681
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)