Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_N03
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    30   0.50 
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    27   2.7  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   4.7  

>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 206 KRHKTSEQASALRHYSSHRYSDCMQHHNPMYERYAKHAEIPQ 331
           KRH  +   +  RHY S+   D ++      E Y++ +E+P+
Sbjct: 205 KRHVDNYNENRRRHYDSYSSYDELERRRSSNESYSRRSELPR 246


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 111 AYTFEPSRLIEKDHLSVDFPVCSR 182
           +YTF P + +  DH+++D P  SR
Sbjct: 9   SYTFSPKQPLSLDHVTLDLPKGSR 32


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 458 MPMLNLLAGPA*IPMTFHPRPSYATPSP-PTQKWYPMSP 345
           MPM+N+  GP   P+   P P     SP P     P +P
Sbjct: 274 MPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGAP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,838
Number of Sequences: 5004
Number of extensions: 58709
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)